RNA id: XR_002473955.2


Basic Information

Item Value
RNA id XR_002473955.2
length 1896
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110526436
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68679317 ~ 68681675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacacacacacacgctcaccaaTGCATACATGTAAGCAACATAAGACacacaaatgcatccaacaagtttgtggtcacaagcttgatgtaatcattgtgtgctaggaatatgggacctaTACAAAacatttgactactttaatacacattagtgaatttgtcccaatcattttggtcccctaaaatggggggactacagtatgtacaaaaagtgctgacATTTCTAAACGGCTAACCTGATATGATCCTCAAATTACAGTTTTTTTCCAATTGCTAACACACTAAAATGACATGCACAGCACAATTATTTAAACTGACACACAGAGAGCAAAACCTCTTCTCAAGTCTCCAAAAGTCTAAACACTTTTTCTGCTTTACACACATTTTGCAATTCAAAATGGCACTTTTTAAATGCACTGCACATGGTTCTCTGCATAAGACACAACAATCTGACATAAAGTCACATGTTTGCCATTTCAAACACTGCCAttcaaaatgacactacatgagCTAATTGGCCAATACATGTGCCACCTGGCCAAACACCTCAATGGTTAAATGTTACCACTTCAATCAGGAAGTAAGCACTATGAAAAGGCCACAGGTGAGCACCTTTTGTTTTACAACAACAATGGAAGCCgttgcagagagaggaagaggaagaggaagagggagggtgagaatgagagggggaggaagagtgagaggtATGGGTAGAGCTGGTAGAGGAGTTCACGGCCAAAGAAGACAACTTTCAAATGAAATCAGAGCAACCTTAGTTGATCATGTCATCAACCATGGGCTGACAATGTGAGAGGCTGGACAGAGAGTGCAGCCCAACTTGAGCCATTTTACTGTCGCCTGTGTCATTGAGACTGGAGTACAGGACTGAGAGACGCAACCATGGTAGAGGAAGGGGCCAAATGTTCACCGGGGTACAGGAAGCTGCCATTGTAAACTTGGTTTTGGAAAATAATGAAATCAGATTACAAGAAATTCAAAGCCACATCATCCAAGACAACACCATATTCAACAACATTCAACGAGTCAGTCTGTCCACATTGGCTCGCATTCTCAAGTGAAACCAAATCAGAATGAAACAACTTTATAAGGTGCCGTTTGAGAGAAACTCTCAAAGAAACAAAGAGGTCAGACGAGCATATGTGGATGGAGTACTGGAAATGGATGCTCATGCAATCCCACATGAGTTCATCtttatagatgaggctgggttcaaTCTAGCAAAGACCAGAAGAAGGGGGAGAAACGTCATTGGCCACAGAGCCATTATAGATGTTCCTGGCCAACGTGGTGGGAACATCACAATGTGTGCTGCCATCTCCAATACGCATGGTGTCCTCCACCGGAATGCCAACCTTGGACCATACAACACAGCCCATATTCTCACATTTCTGGACAGACTCCACAACATTCTCATACCACCAGAGCGTATGAATGATGCAGACCATCAAAGAACCCGGTACGTTGTAGTATGGGACAACATGAGCTTTCATTGTGCAGCCCCAGTCCAAAACTGGTTTGCTGACCACCCACCATTTCTCGTGCAATACCTCCCACCATACTCACCATTTCTGAACCTCATAGAAGAGTTGTTTTCGGCATGGCGATGGAAGGAATACGACTGGCAGCCCTTTGTGAACATGCCTCTTGTGCAGGCTATGGAAGAGGCACGTGATGAGATTGATGTGGGTGCGAttcagggatggataaggcactcaaGGCACTTCTTCCCTCGATGTCTGGCAAGGGAAGATATTgcctgtgatgtggacgaggcgttgtggccagacccagctgtgatgtggacaaggcgttgtggccagacccagctgtgatgtggacgaggcgttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609803 lncRNA upstream 52540 68626445 ~ 68626777 (+) True G538507
TU609151 lncRNA upstream 129827 68549132 ~ 68549490 (+) True G538010
TU609149 lncRNA upstream 131841 68547156 ~ 68547476 (+) True G538008
TU609162 lncRNA upstream 153028 68487682 ~ 68526289 (+) True G538021
TU609853 lncRNA downstream 14032 68695707 ~ 68695910 (+) True G538554
TU609854 lncRNA downstream 15200 68696875 ~ 68697228 (+) True G538555
TU609860 lncRNA downstream 20950 68702625 ~ 68702966 (+) True G538559
TU609863 lncRNA downstream 23090 68704765 ~ 68705103 (+) True G538562
TU609864 lncRNA downstream 23513 68705188 ~ 68705423 (+) True G538563
XM_021607420.2 mRNA upstream 14925 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 34726 68640790 ~ 68644591 (+) True LOC110526432
XM_021607416.2 mRNA upstream 38704 68627574 ~ 68640613 (+) False LOC110526430
XM_021607415.2 mRNA upstream 38704 68630014 ~ 68640613 (+) False LOC110526430
XM_021607417.2 mRNA upstream 38704 68633659 ~ 68640613 (+) True LOC110526430
XM_021607435.2 mRNA downstream 93799 68775474 ~ 68780317 (+) True LOC110526444
XM_021607440.2 mRNA downstream 135264 68816939 ~ 68818769 (+) True LOC110526448
LOC110526954 mRNA downstream 166996 68848671 ~ 68856233 (+) True LOC110526954
XM_021607442.2 mRNA downstream 199915 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 241163 68922838 ~ 68936761 (+) True LOC110526452
TU608686 other upstream 911704 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 922699 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1568689 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1574409 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1574455 67104411 ~ 67104862 (+) False G537029
TU609862 other downstream 22723 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 129444 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 224370 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 314408 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 329931 69011606 ~ 69011962 (+) True LOC110526955

Expression Profile