Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021607432.2 |
| length | 1322 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | LOC110526442 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 68707370 ~ 68713633 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006378 | mRNA polyadenylation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0042382 | paraspeckles | cellular_component |
| GO:0005849 | mRNA cleavage factor complex | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0017091 | AU-rich element binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| K14397 | NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU610059 | lncRNA | downstream | 1947 | 68705194 ~ 68705423 (-) | True | G538715 |
| TU610058 | lncRNA | downstream | 2204 | 68704941 ~ 68705166 (-) | True | G538714 |
| TU610057 | lncRNA | downstream | 2914 | 68704247 ~ 68704456 (-) | True | G538713 |
| TU610056 | lncRNA | downstream | 3393 | 68703748 ~ 68703977 (-) | True | G538712 |
| TU610045 | lncRNA | downstream | 10392 | 68696208 ~ 68696978 (-) | True | G538701 |
| TU610166 | lncRNA | upstream | 144734 | 68858367 ~ 68858791 (-) | True | G538798 |
| TU610168 | lncRNA | upstream | 145599 | 68859232 ~ 68859489 (-) | True | G538800 |
| TU610219 | lncRNA | upstream | 181355 | 68894988 ~ 68898434 (-) | True | G538848 |
| TU610733 | lncRNA | upstream | 196961 | 68910594 ~ 68910827 (-) | True | G539287 |
| TU610770 | lncRNA | upstream | 242580 | 68956213 ~ 68960962 (-) | True | G539317 |
| XM_036980831.1 | mRNA | downstream | 337 | 68698250 ~ 68707033 (-) | True | LOC110526952 |
| XM_021604935.2 | mRNA | downstream | 11635 | 68683171 ~ 68695735 (-) | False | tradd |
| XM_021604936.2 | mRNA | downstream | 11665 | 68683171 ~ 68695705 (-) | False | tradd |
| XM_036979131.1 | mRNA | downstream | 20599 | 68683171 ~ 68686771 (-) | False | tradd |
| NM_001124639.2 | mRNA | downstream | 21835 | 68683209 ~ 68685535 (-) | True | tradd |
| XM_036980830.1 | mRNA | upstream | 420 | 68714053 ~ 68720434 (-) | True | LOC110526441 |
| XM_021607423.2 | mRNA | upstream | 10418 | 68724051 ~ 68729230 (-) | True | LOC110526437 |
| XM_021607424.2 | mRNA | upstream | 16311 | 68729944 ~ 68743853 (-) | True | LOC110526438 |
| XM_021607428.2 | mRNA | upstream | 31031 | 68744664 ~ 68759919 (-) | False | LOC110526439 |
| XM_021607429.2 | mRNA | upstream | 31031 | 68744664 ~ 68759920 (-) | False | LOC110526439 |
| TU609730 | other | downstream | 190689 | 68510315 ~ 68516681 (-) | True | G538460 |
| TU609527 | other | downstream | 562463 | 68142251 ~ 68144907 (-) | True | G538277 |
| TU607613 | other | downstream | 2157396 | 66549367 ~ 66549974 (-) | True | G536630 |
| TU607649 | other | downstream | 2202345 | 66500388 ~ 66505025 (-) | True | LOC110526387 |
| TU607202 | other | downstream | 2425751 | 66277202 ~ 66281619 (-) | False | LOC110526379 |
| TU610131 | other | upstream | 93780 | 68807413 ~ 68811230 (-) | True | LOC110526447 |
| TU610756 | other | upstream | 235887 | 68949520 ~ 68953664 (-) | True | LOC110526455 |
| TU610759 | other | upstream | 289110 | 69002743 ~ 69005665 (-) | True | G539306 |
| TU610933 | other | upstream | 559485 | 69273118 ~ 69287090 (-) | False | LOC110526462 |
| TU610935 | other | upstream | 559485 | 69273118 ~ 69289496 (-) | False | LOC110526462 |
