RNA id: XM_021607426.2


Basic Information

Item Value
RNA id XM_021607426.2
length 3080
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110526439
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68744664 ~ 68759926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGAAACAGACGCGCTTTTTCCGTTTACACCGAACGCCACTAGGGGGGTGGGCGGTGTAGCCCCGTGGCGTCgccaggagaagagggggaggggaggatgagCGAGAGTGAcagtgacaaagtgaaaaattTGTTGGGAGTCGGAGTAAGGACAGCGCCCATGCTGAAATTGGATAGGCCTACCTTTTTATTCTCACATCGAAACATCGGACTCTTGTTCTCCGGTCGGAATAGCGGCGAATGAAACATCGGATCATTTGGACATGATGTGTCCTAGGATCTGTGGAAGCCACCCCGCCGTGCTAAGTCCTCCCAGCATGCAGTAGGGGCGGTCCACCTTAACTCCACATTTCATGGCATCGCCCTCTAAAGGAGCCAGGATGTTTACAGGTTCTACCAAGAACCCAACCCCTAAAATACCTCAGCCTGAGAGGCTGGACGAGGTGTACTCTGCACTGAGGAGAGGCCTacaGTCATTCCTGCAGGTCCACCAGCTGGAGCTGGGCAGCCTGGGGCAGCAGataagagagagcaagagaaatgGCCGTCTGGGGTCTCTGTATGAGTTGGATAAGCAAGTGAAGGCTATAGAGAGATTTATGCGTCGCTTGGAGTTCCACCTCAGCAAGGTAGAGGAGCTGTACGATGCTTACTGTATGCAGCGTCGGCTGAGGGATGGGGCCAGCAAGATGGTGACAGCCTTTAACTCTGCCACAGGGAGCAAGGAGGCACGGGAGAGCCTGAATGAGGCCAACAGGGGCTACAGGGAGTACACTGAGcacatGTGTTCGCTGGAGAGTGAACTGGAGAACCAGATGGGAGAGTTTCACATCAAGATGAAAGGTCTGATTGGCTATGCACGGTTGTGTGCAGGAGACCAATATGAGGTCCTGATGCGTTACGGGCGTCAGCGCTGGCGGATGAAAGGTCGTGTGGAGGTCAGCAGTAAACAGGTGTGGGACAGTGAAGACAACGTCTTCCTGCCTCTTATCACAGAGCTCCTGTCAATCAAGGTGACTGAGCTGAAGAGCTTGGCCAATCACGTGGTGGTTGGCAGCGTGTCCTGTGAGACACTAGACCTGTTCTGTCCACTGCCTCAGACGGTTGCTGTGGATATCAATGACTTGGGGACAGTAAAACTGAACCTAGAGGTCAACTGGAGTCCGTTTGATAAAGATGACCAGACCTCGTCCTCCAGTACGGTTTCGAAGCGCTTTTTGTCCAATCAGAGCCCTCCAGACACACCTTCCATGCGCGAGCAGGTGTTTTATTATCTATTGAGGAGACCAGGGGAGCTGGAGAATGGTACAGTCTGGTCAAACTCCTCTGAATCATCGGACGACTCTTCCAGCCCAGccatgggacacacacacaggatgatgGCCACTCACAGCCTGCAGACCACACCCACTATCCAGATCTCCTTCAATCCCCGCCAATCAAGCGTCTCTACCCCATCCCTCTTGTCCAATCAGGAGGAAGGGGAGCCAGACGCCACCAAGGGATTTGGCAAAACAGACTCTGTGAAGTGTACACTGCTGAATGGCCATTTGAAGTGTTCACGATCTCTCAGCCATATCAGTGAGAGAGCCATAGACTGTGCTTCGACTAACAGGTTGTCTGACCAATCAGTTGAGTCCTCTGAAACTCCAGAACCCCTACCCCGCTTAGACCTTGAAGTCTCCTGTGTGGCTTCTCACTGCTCTAACCAGGACATGCATGAAGCATTGGACTTGCATGAGTCTGGGGGCCCAGAGTCATGTGTTTCAACCCCAGTGGATCAAGGTGATGCTCCTCCAGCCTCAACACTGCAGGCCGAGAAGCCTAGGGCTGGAGTTGAGGCTCTTCCCACAGACTGTGTACTgggagagggactgagggaggaaaAGTCCTCCGCGGAACACATTCACAGACTCCAATCTACTCAACCACAAGAGCTAACACTACCTGAAGAGACAGTGACTGTGAGTGGTCGATCTCACAGTCGGTCCTTCAGCTTCACTCAGGAAGTTGAGACTGCCCTGGAGAGCTTTGATTTTCTCAACTGCTCTGACCTtgatgatgaagaagaggaggagaaagaacaAGCAGAAGAGGAAGAAGATGAACAGAAGAGGGATGAGAAGGAGAAGGAACAAGAGAAGGAAGACGAGACAAGGGACTTTGCTGAGAGCAGTGATGAGTGTGAGGACGATGTTATAGAAATCATTGTCGAGGCCCCTGAAGGCTTCCGGAATGAGGACTGTCCTCCTCTAGATGCAGACTGCAGCTCTGAGgaggaggagagtagcgAGCAGCTGCAGGCCTCCAGTGAGACAAAGGAAGAGCAAGAGGAagaaaaagagaaggagaaagtggaagacaagaaggaggaggagcaggttACAGAGATGGACATCCCTGCCACACAGGAGCATGGTGATGAGGCATCCTGTGTTGAGGAACCCCGCTCCTCGACCCACAGCAGTATAGCCACCACTGTCCTTTAACATAATGGAGATGCCACTTCTTCAGACCATTATCAGATGCCATCCTAAATCCCACCACTCTCTTAAGAGGTCCTTACCATTTCACCTCTAACAGATCAAAgagctccactcctcttctcgaTCAGACAATACATTTCTGCCATGGAGTTATTATAGATCAGACAAGCAATTTCTGCCATGGAGTTCTTCTAGATCAGACAAGCAATTTATGCCATGGAGGTGGAGATTGCGCAAATGAACAGAAATATATTTGCCTCCCTCACTCCACTCGTGATTGAAAACATGAATGACTATTGTTGTCCACTCATCCAAAGGCCGcgtgtacacacacagtcaccttACAGTGAAGATACATTTTTAGTCTAATGGAGCCTCTTCAATCAGAAAGTGCCTCAAGTTACAGAAAGAGGGATTGTCAGTTAACGAATACATGAAGAAAATGATATTTTTATTACGAACCAGAGAAGAATATGAATGAGTATAAAGAAGAGTTTTGATACATTGTTTATTTTCCGGATGACTTAGATTGTGCACTATAAAAGATACAATTATTTACTGTTtcatataaataaataatgttgAGCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610059 lncRNA downstream 39241 68705194 ~ 68705423 (-) True G538715
TU610058 lncRNA downstream 39498 68704941 ~ 68705166 (-) True G538714
TU610057 lncRNA downstream 40208 68704247 ~ 68704456 (-) True G538713
TU610056 lncRNA downstream 40687 68703748 ~ 68703977 (-) True G538712
TU610045 lncRNA downstream 47686 68696208 ~ 68696978 (-) True G538701
TU610166 lncRNA upstream 98441 68858367 ~ 68858791 (-) True G538798
TU610168 lncRNA upstream 99306 68859232 ~ 68859489 (-) True G538800
TU610219 lncRNA upstream 135062 68894988 ~ 68898434 (-) True G538848
TU610733 lncRNA upstream 150668 68910594 ~ 68910827 (-) True G539287
TU610770 lncRNA upstream 196287 68956213 ~ 68960962 (-) True G539317
XM_021607424.2 mRNA downstream 811 68729944 ~ 68743853 (-) True LOC110526438
XM_021607423.2 mRNA downstream 15434 68724051 ~ 68729230 (-) True LOC110526437
XM_036980830.1 mRNA downstream 24230 68714053 ~ 68720434 (-) True LOC110526441
XM_021607432.2 mRNA downstream 31031 68707370 ~ 68713633 (-) True LOC110526442
XM_036980831.1 mRNA downstream 37631 68698250 ~ 68707033 (-) True LOC110526952
XM_036980833.1 mRNA upstream 1628 68761554 ~ 68767075 (-) False LOC110526443
XM_021607434.2 mRNA upstream 1633 68761559 ~ 68767262 (-) True LOC110526443
XM_036980838.1 mRNA upstream 22314 68782240 ~ 68785440 (-) False LOC110526445
XM_021607437.2 mRNA upstream 22314 68782240 ~ 68785538 (-) False LOC110526445
XM_021607436.2 mRNA upstream 22314 68782240 ~ 68785883 (-) True LOC110526445
TU609730 other downstream 227983 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 599757 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2194690 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2239639 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2463045 66277202 ~ 66281619 (-) False LOC110526379
TU610131 other upstream 47487 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 189594 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 242817 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 513192 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 513192 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile