RNA id: XM_021607434.2


Basic Information

Item Value
RNA id XM_021607434.2
length 2124
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110526443
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68761554 ~ 68767262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaccTGCTTCCGGTCTCCACCACTTTTCTTTTGTCAACTGGCTCACACATTATCTCTCTCCCTGGATCTCCAGCTCTGCAATGTGCTAGAAATAAGAAACCGGTGGATGTATCTTTATTGACAAATTTAGGTCCCCGTGATTGCAAAGAGCAAGGATGCTTTTCCACTTCTGTCCCCAGTGTGGCACCAAACTACAGCCTGGATTCCGGTTCTGCCCCTCCTGTGGGGACAAGTTGCAGTGTGTTGTGGACCCCTCTGGACCTGTGGAGGCTGCTTCCTCTGGAGTCTCTCTGCTTCATGTCACTGATGGTGTAACCAAGACTGCTAATGCAAGCAGTCCTACTCCAAGCACAGGACAACTGACTGGCTGGGACACAGAAGGTCTTGTCTGTGCCACCCCCAGTCCAGTGTCGACCCGTCCCCCACTGCGTAGGACCCGTAACTCAGTCCCCGCGGCCCGGAACGATGAAACTCCTAGTAGTATAGCCAGTCCTCCTGTCACTGCCTCCCCGAAACGTACTACAGATCAAAGCCACAAATCTGTGATGTCTCCACGAAAACGACGTGCTGTCACCCCAAAAGTGGAGCAGATAAAAAAGGAACCGTCTGTGGAGCTGGCCTCCTCACCTGGCTCTTCACCTCTCCCCAGGTCCCCCTCCACAGtcaagGGGAAGGCGAAGAAGGCCAAGCGAGCATGTGCTGTGGAGCCACTGCAGGAAGGGGAGGAGCTTTGTGACACAACTGGCAGGAAATGGAGGCTTGTGAAACTGTTGAGTCAAAGCGATGCAGAGATGTTCTatggagTCCTGCAGAATGGGCCAGGTGCCAATTCCAGTGACTGCAAGCACATCCTCAAACTAGGGGCTAAGGACGGGAagatgtttaatgagctgaaCTTCCTCCAGAGAGCTGCCAAGCCCTCATCTGTGGACAAGTGGATAAAGCACGCCAAAATGGACTTCCTTGGGATTCCTACCTGTGTAGGATTTGGTCTCCATGCAGACtcttacagGTTTTTGATTTTCTCCAGCATGGGCCAAACTCTTCAGTCTTTCATGGATGAGGGGGAGGGGCTCCTGTCTGAGAAAGTGGTCCTTCAGCTGGCCTGCAGAGTAttGGATGTGTTGGAGTTCATCCATGAAAATGAGTATGTTCACGCAGATATCCATGCTGAAAACATCTACATCAGCCCAGCACAACAAATACAGgTATACCTTGCAGGGTACTGCCATGCTTTCCGGTACTCTCCTGGTGGCCGGCATGTGGAGTACCGTGAGGGCAGCCGAACACCACATGAAGGAGCCATAGATTTTATAAGCCTGGAGTCTCACAAGGGAGCAGGTCCGTCTCGCCGTAGTGACCTGCAGGCTTTGGGCTACTGCATGCTGCGCTGGTACACAGGGGCACTTCCCTGgacctccctcacacacacaccagcccgcgttgccatggagaaggagagATACATGGAGGACGTTCCAGGTCTCCTGAGTCACTGCTTCGGACAGAAGAAAGTCTCGAGTGCGCTGCAGGTGTACCTGTCTCAGGTGATGGCTCTGCAGTACTCTGACCAGCCGGACTACAGGGCTCTGAGGGCAGGCCTTAGTGCAGCTCTGCAGAAGCTGGGAGGGTCACTGGAGCAACCCCTTGACCTGCAGATGAAAGCGATCGGAGGAAGATGATCCTTCGGGATGAAAATTCACTAATGAGATTTTTAGCCAACTGTTTTTAAAATGCTGACTTTGTGACTCTGTATGTGGTGTGAGTCCTGCTGTCTTTTTATTATGTTGGAGTACACTCAAGGAGGAGCGTGGGAAGGTGCGTTTCATTAAGTTCACTGGAGGTGCAGTGCACAGAAACTCCTGGTTATGCCAGGTTAGTGAGCACTGCTGTAATGTGTTATTGTCAGCAGTGGTTGGCGCTGTGTCAGTGAATGTGTAGTTAATGTTTAAGCTATGAAATAACAGTTTATAACAAAGAACCTTTGGTCAGGGTGGTAATGTAAGTACAATAATGTGCACTGTTCCAGTTAGGTGTTGCAGATGTTCATGATATGCGTTTtactttttgtattgttttgaTCACAGGATAATACTTTATTAAAGAGCTTTTATTAATTCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610059 lncRNA downstream 56136 68705194 ~ 68705423 (-) True G538715
TU610058 lncRNA downstream 56393 68704941 ~ 68705166 (-) True G538714
TU610057 lncRNA downstream 57103 68704247 ~ 68704456 (-) True G538713
TU610056 lncRNA downstream 57582 68703748 ~ 68703977 (-) True G538712
TU610045 lncRNA downstream 64581 68696208 ~ 68696978 (-) True G538701
TU610166 lncRNA upstream 91105 68858367 ~ 68858791 (-) True G538798
TU610168 lncRNA upstream 91970 68859232 ~ 68859489 (-) True G538800
TU610219 lncRNA upstream 127726 68894988 ~ 68898434 (-) True G538848
TU610733 lncRNA upstream 143332 68910594 ~ 68910827 (-) True G539287
TU610770 lncRNA upstream 188951 68956213 ~ 68960962 (-) True G539317
XM_021607425.2 mRNA downstream 1633 68744664 ~ 68759926 (-) False LOC110526439
XM_021607426.2 mRNA downstream 1633 68744664 ~ 68759926 (-) False LOC110526439
XM_021607427.2 mRNA downstream 1633 68744664 ~ 68759926 (-) True LOC110526439
XM_021607429.2 mRNA downstream 1639 68744664 ~ 68759920 (-) False LOC110526439
XM_021607428.2 mRNA downstream 1640 68744664 ~ 68759919 (-) False LOC110526439
XM_036980838.1 mRNA upstream 14978 68782240 ~ 68785440 (-) False LOC110526445
XM_021607437.2 mRNA upstream 14978 68782240 ~ 68785538 (-) False LOC110526445
XM_021607436.2 mRNA upstream 14978 68782240 ~ 68785883 (-) True LOC110526445
XM_036980835.1 mRNA upstream 19471 68786733 ~ 68792248 (-) False LOC110526446
XM_036980834.1 mRNA upstream 19471 68786733 ~ 68792690 (-) False LOC110526446
TU609730 other downstream 244878 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 616652 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2211585 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2256534 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2479940 66277202 ~ 66281619 (-) False LOC110526379
TU610131 other upstream 40151 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 182258 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 235481 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 505856 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 505856 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile