RNA id: XM_021607435.2


Basic Information

Item Value
RNA id XM_021607435.2
length 2181
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110526444
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68775474 ~ 68780317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCACTACCACGACAACAGCCACTACTTctactcctaccaccaccaccaaagaAACTACCCCTAAAACtaaaactactgctgctactctttcTTCAACCAGTGAAACAACTCCTGTACCCTTGACaactccttcctctccccccatTATCTCACCCAGCTCTACTACACCTTCTCCAATCCCTTCCACCAAAACCTTCACAACTCCTGTCCTTACCACTACCACAACTCTCACTACTTCAGCTACCTCTCCTGATCAGGAAGTTTGTCTTGCTGTGGAGATTAATCTGACAGCAACCTTGGTTGCAGACAGTATCTGCAAACAAGATCTCATTCAACATGGCAGAGATTTTGAACCCTGAACTCGAGGTGAACCTGCCCCACAACCTTCTCTCAGGGCTAAAGCGGAGACACACCCCTGACATGGTTAAGTTCATCTTCTCTGTGCTTAAAACCTCACCACCAAATTGGGTGAGTTACCATGCACTCCCAAGTTGCACATCACATGGCTAAAACATCTTAAACGTTTGTCAGgaataatgtgtgtgtctgtgtgtagaccGTAGAGGGACAACTTGGTAAGATTCTCTTTGGTATTGAAGTTGAGAACATAACCATCTCTCACCTGTCAACACCATTCAACATGACCTTCAAACACAAATCTGAACTACAGGAAAAAGAGAATACAACGTGTGTCTACCACAACCAGAGTCGAGGTGAATGGGTCACTGATGGCTGCCACACCCTGAGGCTCACTAACCAGACCATCTGTAGCTGTGACCACTTCTCCTTTTTTGCCCTCATGATCCCTGATATGAAGCTGAGTGAGGTCCATGCCAGGATGCTGAGTGTGCTCACCTGTGTGGGCGGAGCCATCTCTGTGTTCTTCTGCACCATCACCTTACTGACACACTGTCTTCAGCATTCACGGAAATCTACTGACCATGCCATGCTGGTTCATCTCCAGTTGGTGGCATCTCTGTTGTTACTCAACCTGCTGCTCTTGACCAGTGTGGGTTTGGCATTTGTGGGCCCTGCATCTATGGCCCCTGGCCTGTGTCCTGCCGTGGCCGCCCTGCTGCACTACTCACTGCTCTGCTGCTTCACCTGGATGGGCCTGGAGGCTCTGCATCTGTACAGGCTGCTGGTCCTAGTCTACAACACCTACATGAGACACTACCTGCTGAAGCTGAGCCTGCTGGGCTGGGGTGTTCCTGCTTTGGTTGTATCCATAGTCGCCGCTGTCAGTACAGATTTCTATGGGCTGAATAACCGAATGTGCTGGATCAAAGACTCTGGTGTGCAGTACGGCTCTGTTGTGGCTTACCTGATAGTGGTCCTGCTCTTCAATAGCACCATCTTCGCCATCGTCATCACAACGATGCTCAAGCTGCGCTCTGTCACGTCGCCGCAGGGGAAGAGGCAGAGCCGCAACATCACCTGCAGCGTTCTTGGGTTGACCTGCATCCTGGGCCTCACCTGGGGGGTGGGCTTCTTCTCCATGGGCTACACCAACTATGTCATCCTCTACATCTTTACCATCCTCAACTCACTGCAGGGGTTCTTCCTGTTCCTATGGCTCTGCGTTAAGAGACTGCGGGGGGCAGAGCAGAGTTCCATGACAACTGGACAGAGCTCAAGCACCCACATTCTCTCCGTGGGAAGCGAGGTCTGGCCCTCTTCTGGAAGAACAAGGCAGTCAGTGCAAGAGGGAGCAATTGCTGACAATACAGCTAAGTTCTGACCAAAAGCTGACTTTAGTTTGTGATGCTTTAGCTCACTGAGATGAAAGGAAATCTACAAATGGAAATGAAGTACCGTGAAGGAATTGTTTTGCTTCGGTcccatacagtacatcacattcttaaataaataaatgttaaagCAGATAACCCTTAAGAAAGAACATGTTGTACTCCTATCGTTTAATTTCTTCCTGTTAAAATGAGATTTGCTGTTTTATATGCCATGATTTATATGCCACCTTTCACCTAAAGCcttctattattattattctggGATGGAAAGGGGGGTTGGAACTGTTCTCAGAGATGAAACGAAAGTGAATTGTAATGATTGTACACTAATTCTGTATtaaatatacatatacagtaccagtcaaaagttgacactgtcatgacgttggcctgggggatgggtttatgacagtcataaatacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609868 lncRNA upstream 65846 68707409 ~ 68709628 (+) True G538565
TU609865 lncRNA upstream 68174 68706919 ~ 68707300 (+) True G538564
TU609864 lncRNA upstream 70051 68705188 ~ 68705423 (+) True G538563
TU609863 lncRNA upstream 70371 68704765 ~ 68705103 (+) True G538562
TU609860 lncRNA upstream 72508 68702625 ~ 68702966 (+) True G538559
TU610152 lncRNA downstream 65241 68845558 ~ 68845766 (+) True G538785
TU610155 lncRNA downstream 67723 68848040 ~ 68848328 (+) True G538788
TU610167 lncRNA downstream 78974 68859291 ~ 68859533 (+) True G538799
TU610226 lncRNA downstream 120478 68900795 ~ 68901024 (+) True G538851
TU610228 lncRNA downstream 122064 68902381 ~ 68903425 (+) False G538852
XR_002473955.2 mRNA upstream 93799 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 111082 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 130883 68640790 ~ 68644591 (+) True LOC110526432
XM_021607416.2 mRNA upstream 134861 68627574 ~ 68640613 (+) False LOC110526430
XM_021607440.2 mRNA downstream 36622 68816939 ~ 68818769 (+) True LOC110526448
LOC110526954 mRNA downstream 68354 68848671 ~ 68856233 (+) True LOC110526954
XM_021607442.2 mRNA downstream 101273 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 142521 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 158325 68938642 ~ 68946874 (+) True LOC110526454
TU609862 other upstream 70778 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 93822 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1007861 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 1018856 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1664846 67109676 ~ 67110628 (+) True G537032
TU609930 other downstream 30802 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 125728 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 215766 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 231289 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 581324 69361641 ~ 69367642 (+) True G539068

Expression Profile