RNA id: XM_036980838.1


Basic Information

Item Value
RNA id XM_036980838.1
length 1681
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110526445
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68782240 ~ 68785883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATATTATGTGGAGACGTTATCATACTCGGATATCAGGTAATGCGAATGTAAAGTATCAAACTTTCATTCGTCAACCCACGCTTGATGCAGACAGTGTTTAGCTATTCCGTCAAATGTTTCCATTGTGTTAGCCCATATGGATAGTCTTCAGCTCAATGACTGGGCGTCTATGGGAAGACCTAGTATGATAGCTGAGCCAGTCACACTTCGTATAAAATGAATGGAATGCTACTTACCAACTAGCTATATTATGCTGCACACACAATGCTGAATGCTTCTACCAAAAACTAGCTAGCTTGTAACGTTAGCAGCTATGCTGTCTGTGTCCCGAGTCAGCTGACTCAGCGTTACAATATATTGATCGCGGAGAAACATGCTgatttacgaactgacttgtgaTAACATTCTCTCTTTTGGGGCAGGATGTCTACAACTTTAGGGTAATTAAACAAGCCAAGCAGTGTTGCCAGGTCTAGTAAAAATGTCTAACCCAATGACCTCTGAAAACCCGCCCACAAGGTCTGAAAACTAGCCCTAAAATGTTGTTttgcaacattttgaaaaagtcaatagTGGAGGTAGCGCTAGAGGAGCAGCCCCCAGAGCAGGCAGCCTCGGTGAGTGACGCAGACATCGCAAGTGCCATCAACGGCATCCTGAAGGCAGCAGAGGATCACGCTGTGGTCAGAGACACCGGGGCTGTGATTGTGGGCCAGGTCAGTGCAGGGGCCACACCATCTGGCCGGAAGTGGAGCTCCGTGTGGACGCACTACGAGCGGTTGGGGGAGCAGAACCGTGCGCTTTGTCTGATCTGCAATGAGAAGATCCAGCACCAGAGCAGCACCAGCAACCTGCTGCGCCACCTCTCCAAGAGACATCCAGAGGCCTTTGCTCGCCTGGAGGGCCACATCAAGAAACAGAAGACCAGCGACGTCCAGAAAACATTGCGTAGAGACGGCGACCCAGGCCCAAAACACACCAACCTGTCAAGGAGAATTGGAGGGGTAGCACTGAAACAAAGCCCAGGGAAATTTCCAGATGCATTTGATGTGATGGGAGCATGTGAGGGGGAGGTGCGTGTGTTGGAGCGGGAGCGTGAGCTGACGGAGGCCTTGAGGAGGGCTCAGCAGCAGGAGGCACGGGCGCTGGAGCAGCAGAGGGAGCTCCTGGAGACACTACGTCGGGCCAACACCAGAGAGGCATCTGCAGAGAAGGTGGCCCTGGAGACCCTGAGGAGAAGCCAGGAGCAGGAGGCCCGCTCcctgcagagggagagggaagaccTGCAGAGAGAGCGAGTGGAGTTGCAGATGGAGAAGGAAAGGATgcaaagggagagggaggagctgGAGTGCTTAAGAAGGGACTCTGGGCAAGAGAGCAGTCCGGTACAGACAGTGGACCGAACCACTGGGTTGTTCCAGGGGGACGTGGTACAGGAACAGGAGGTGACTATGAGGGAAGAGGTTCTTGGTTAGGGGATGTTTCAGTAAGCCAACAGGACGATACTGTAATGTTCAGAAGTTGACCACCTATCCCATCACCATGCATTCAGACTCTAACTCAAACACCTCTCTCTaaaaggagggagatggtgggtgAATGCACTCAGGAGGGGGTTTAGTGATGTAAATACTTTTGTAActtttttaatgaaaataaacCTGTACCATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610059 lncRNA downstream 76817 68705194 ~ 68705423 (-) True G538715
TU610058 lncRNA downstream 77074 68704941 ~ 68705166 (-) True G538714
TU610057 lncRNA downstream 77784 68704247 ~ 68704456 (-) True G538713
TU610056 lncRNA downstream 78263 68703748 ~ 68703977 (-) True G538712
TU610045 lncRNA downstream 85262 68696208 ~ 68696978 (-) True G538701
TU610166 lncRNA upstream 72927 68858367 ~ 68858791 (-) True G538798
TU610168 lncRNA upstream 73792 68859232 ~ 68859489 (-) True G538800
TU610219 lncRNA upstream 109548 68894988 ~ 68898434 (-) True G538848
TU610733 lncRNA upstream 125154 68910594 ~ 68910827 (-) True G539287
TU610770 lncRNA upstream 170773 68956213 ~ 68960962 (-) True G539317
XM_021607434.2 mRNA downstream 14978 68761559 ~ 68767262 (-) True LOC110526443
XM_036980833.1 mRNA downstream 15165 68761554 ~ 68767075 (-) False LOC110526443
XM_021607425.2 mRNA downstream 22314 68744664 ~ 68759926 (-) False LOC110526439
XM_021607426.2 mRNA downstream 22314 68744664 ~ 68759926 (-) False LOC110526439
XM_021607427.2 mRNA downstream 22314 68744664 ~ 68759926 (-) True LOC110526439
XM_036980835.1 mRNA upstream 1293 68786733 ~ 68792248 (-) False LOC110526446
XM_036980834.1 mRNA upstream 1293 68786733 ~ 68792690 (-) False LOC110526446
XM_036980836.1 mRNA upstream 1293 68786733 ~ 68792694 (-) True LOC110526446
XM_036980839.1 mRNA upstream 24883 68810323 ~ 68816777 (-) False LOC110526447
XM_021607441.2 mRNA upstream 42137 68827577 ~ 68829756 (-) True LOC110526450
TU609730 other downstream 265559 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 637333 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2232266 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2277215 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2500621 66277202 ~ 66281619 (-) False LOC110526379
TU610131 other upstream 21973 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 164080 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 217303 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 487678 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 487678 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile