RNA id: TU610131


Basic Information

Item Value
RNA id TU610131
length 1364
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110526447
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68807413 ~ 68816777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACTGGATAGGCCAAAAAGGATCCTGGTCTCTCTAAGAACTACATCATGAGCGTGTTCAAACACTTTGCCAAGACCAAGGTGTCTACAGATGTCTACCCTGTCCTAAAGGAGATAATGGAGCTCTACTTTGACCGACTAGCTGATGACTTTGAGATGTTTGCTGCTCACGCCAAGAGGAAGACCATTGAGGTAGAGGATGTAGAGCTGCTGATGCGGAGACAGGGGTTTGTGACTGACAGCAtgccagtcaatgtgttgatTGAGAAATATTGGACGGTCCACGGTGGCAGGCATTGTCCCCTCTGTGGCACAAGCCATTTGGGACTGTCTGGTTGGTGAATACATGCCTGTCCCTAAGGAGGAAGACTGGAGGGCCATTGCTACCGAGTTCCTGTAGAGGTGGAATTTCCCCAACTGTCTTGGCTCCATTGCTGGGAAACATGTAGTCACCCAGCCTCCACCGACCTTGGGGTCGCAATTCTACAACAAGGGTACATATTCAGTTGTACTCTTGGCTGTTGTAGATGCCATCTACTGTTTCCGTGTCGTCAATGTTGGTGCTTAAGGCAAGGGAAGTGATGGTGGGACTCTGCCTTCGGCCAGGCACTTCAGGATGGCACCCTGGAGATTCCACCACTTGCATCACTCCCTGGGGCTGAAGACCTGGGACCCGGTCCCCACGTCTTCGTCGAGGCTTCCCTTGAGACCCAACCTCATGCGCTGGACGCCAGCTGCCATTGCCAAAGTCTGCAAGGATCTTTAACAAATGACTATCTAGGTAAAGGTTAGTTGTTGAATGCGCCTTTGGGATTCTGGCAGCCTGGTGGAGAATGTATCGGCGAGTGCTTGGTCTCAGCCCCTCAAATGTTGATGCCTGCGTAAAGACCACGTGTGTTCTCCACAACTACATGCGGAGGTCATTCCAGGAGCCGCTCCGGGTGGAGACGGGCACGCCAAATGGTCACCTACCTGATGTCACCAGGACATGTGCCAACACCCCCCCCAGACAGGCACTCCAGGTGAGGGAGAAGCTGACCACCTACTTCATCACCAGCAGGTGAAGTCCCATGACAATATGCCGGAGTGAAACAGCTCTTTGAAGAGCCCCCTAACACCAAGGTTATTTTAAGAACCATCCACCGCTGTCCATAAAATTGCATTTTTGCCCAGATTACTTCAAGTCTCATTGTTTCTCTTCATTTGGAAGTTATATTTAAGTGAAATTTGGGAGTAAAGACCACACCTTaaccccttccctctcccatTAACATCAGTATTATACACACCTGGCAAGTACAGGAAAGAACATGACAGGTATGTGTTGTAAAAATgttacaaaaaataaaaactattgaaagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610063 lncRNA downstream 12485 68711426 ~ 68794928 (-) True G538719
TU610059 lncRNA downstream 101990 68705194 ~ 68705423 (-) True G538715
TU610058 lncRNA downstream 102247 68704941 ~ 68705166 (-) True G538714
TU610057 lncRNA downstream 102957 68704247 ~ 68704456 (-) True G538713
TU610056 lncRNA downstream 103436 68703748 ~ 68703977 (-) True G538712
TU610166 lncRNA upstream 47137 68858367 ~ 68858791 (-) True G538798
TU610168 lncRNA upstream 48002 68859232 ~ 68859489 (-) True G538800
TU610219 lncRNA upstream 83758 68894988 ~ 68898434 (-) True G538848
TU610733 lncRNA upstream 99364 68910594 ~ 68910827 (-) True G539287
TU610770 lncRNA upstream 144983 68956213 ~ 68960962 (-) True G539317
XM_036980836.1 mRNA downstream 14719 68786733 ~ 68792694 (-) True LOC110526446
XM_036980834.1 mRNA downstream 14723 68786733 ~ 68792690 (-) False LOC110526446
XM_036980835.1 mRNA downstream 15165 68786733 ~ 68792248 (-) False LOC110526446
XM_021607436.2 mRNA downstream 21530 68782240 ~ 68785883 (-) True LOC110526445
XM_021607437.2 mRNA downstream 21875 68782240 ~ 68785538 (-) False LOC110526445
XM_021607441.2 mRNA upstream 16347 68827577 ~ 68829756 (-) True LOC110526450
LOC110526455 mRNA upstream 138280 68949510 ~ 68953699 (-) False LOC110526455
LOC110526956 mRNA upstream 207431 69018661 ~ 69020716 (-) True LOC110526956
XR_005052223.1 mRNA upstream 436394 69247624 ~ 69272291 (-) False LOC118964924
XR_002473958.2 mRNA upstream 461758 69272988 ~ 69289162 (-) False LOC110526462
TU609730 other downstream 290732 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 662506 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2257439 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2302388 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2525794 66277202 ~ 66281619 (-) False LOC110526379
TU610756 other upstream 138290 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 191513 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 461888 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 461888 69273118 ~ 69289496 (-) False LOC110526462
TU611171 other upstream 804524 69615754 ~ 69616319 (-) False G539674

Expression Profile