RNA id: XM_021607440.2


Basic Information

Item Value
RNA id XM_021607440.2
length 1831
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110526448
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68816939 ~ 68818769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAAATCTATATTAATTGTGCACAACTCTAAACAAAATGTCATCTTTTTGGGGCTGCCTGCTTAGGACACAAAACAGGAAGTTGTAAGCATTGTGGGACGTGTAGTTCCGCTTCGAGGCCGATGGGCTTGATAATAACGCGAGGAAGAACGAAACAAAAATAAATTAGATAAAACTTCAATAGAATAACAAGTTTATCAGATTTTCATTGGAATAAATATGCCTGGATTCACCTGCTGTGTCCCTGGCTGCTACAACAACTCTCATCGGGACAGAGAGCTGCGGTTCTACACATTTCCAAAGGATACCACGCAAAGGGAAATTTGGCTCAAGAACATCTCCCGGGCCGGGGTGAGCGGCTGTTTTAGTACCTTCCAACCCACTACTGGACACCGCGTCTGTAGCGTACACTTTCCCGGTGGCAGAAAGACCTATACAGTTCGAGTACCGACGCTCTTCCCGCTGAGAGGAGTGAATGAACGCAAGAATCGAAGGGGCAGGAACAGGAAAGCGTCTGCGGCGGCTCCTGTTACAGCCCCCAGTCCAGGTAGTATTGTCATCACAAACGTTGTTTCGACAGCCCCAGGTGCCGCTGAGACCGCTCAGAGCGATGCAGTCACCGACACAGCTGCTACTGATGGCCCTTTCGTGGTGCAGATCGGCCCAGACGGCGAATACCTCGGACCTGTAAATCCAGCCGCGCAGGGTGACGGGTCCTGTTTTACTGCAGTCGTCTCCAGCTCCACTGACCTGGCTGGGGGCGACGATCCCCCTGCTGACGCCGCGGCCGCTGCCCAGCAGCAGACTGTGCAGTACTACAGCGTTGTCAGCAACCCGCTGGACCACGCGTACTCGCTGACCACCGGGACCACCTCGGCCGAACTACTTCGGAAGCTGAACGAGCAGCGGGACATCATCGCACTCATGGAAGTGAAGATGAAGGAGATGAAGGCAACCATCCGCCAGCTGCGCGTAAACGAGGCCAAGCTACAGGAGGAGGTGCGAGAGCGGGACCGTTTGCTCTCCGCAGGAGCAGCGGTAAAGAAAATGTGACCATCATTCCCACCCAAAGGATGGATAGCTAAAGACCGTCGCGACCTAAGACTTTAACGTGAGATGAAGGGGGTCCTTCATGGAGAGCAGAGCAAACCCTCTTTTTTTACGAAAGCGATGACAATTTATTTTCAATAGAAGAGATAGCAAATTTTTGGTCTACTCATGCTATTTTTTTGGCTAGCTAGTTGATAGTAATAATCCCATAGTTGCCTATAAAACATTGCCCAATTTAGTCCACCCGTGTGTTTGCTAAGTGCAAGCAGCCTTTTAGGGCAGTGTAAAAACATTGGCCAATGCATTCTTGTGGATTGCATGGCTGCAACTCTGTAGCCTACTTTTTGGGGGAATTATTAGGCCATTTTTTCTGGTTGTTGAGCTGTTTGTATGTCAGTATCTGCAGTTGAATTCTCATTGCAGTATATTAAACACCAGCTTTTCAGCTCAGAGGCCATCCTCCATACAAGGTTGCTTTGTGACTCTAGCTGTGGGAAGATGTGTTGGGTATTATAAAAGTATGTGTGCTTATGAGGTGCCTATTTCCACGAGACCTGTCTTGATCCATGGCTCTCTGGTTGCAAGGCTTTTACACCACCTAAAGGTtcactgtgactgtgtgtctcaACCTTCTCCCAAATAGTTTGATACAGTATCTGTAGTTGCCACTCACATATGGATATTATGTTAACCTCTGACTGTTGAACTTTGACCTGACAGCAATGACTGTTCTGAAACTTAAACCATAACCATTTGAAGTAAATTTAATTTTGAAATAATA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K23211 THAP11; THAP domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609868 lncRNA upstream 107311 68707409 ~ 68709628 (+) True G538565
TU609865 lncRNA upstream 109639 68706919 ~ 68707300 (+) True G538564
TU609864 lncRNA upstream 111516 68705188 ~ 68705423 (+) True G538563
TU609863 lncRNA upstream 111836 68704765 ~ 68705103 (+) True G538562
TU609860 lncRNA upstream 113973 68702625 ~ 68702966 (+) True G538559
TU610152 lncRNA downstream 26789 68845558 ~ 68845766 (+) True G538785
TU610155 lncRNA downstream 29271 68848040 ~ 68848328 (+) True G538788
TU610167 lncRNA downstream 40522 68859291 ~ 68859533 (+) True G538799
TU610226 lncRNA downstream 82026 68900795 ~ 68901024 (+) True G538851
TU610228 lncRNA downstream 83612 68902381 ~ 68903425 (+) False G538852
XM_021607435.2 mRNA upstream 36622 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 135264 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 152547 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 172348 68640790 ~ 68644591 (+) True LOC110526432
XM_021607415.2 mRNA upstream 176326 68630014 ~ 68640613 (+) False LOC110526430
LOC110526954 mRNA downstream 29902 68848671 ~ 68856233 (+) True LOC110526954
XM_021607442.2 mRNA downstream 62821 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 104069 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 119873 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 136496 68955265 ~ 68955385 (+) True LOC118965123
TU609930 other upstream 5049 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 112243 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 135287 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1049326 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 1060321 67754556 ~ 67756618 (+) True G537606
TU610240 other downstream 87276 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 177314 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 192837 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 542872 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1197573 70016342 ~ 70019477 (+) True G539959

Expression Profile