RNA id: LOC110526954


Basic Information

Item Value
RNA id LOC110526954
length 5308
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110526954
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68848671 ~ 68856233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTTGCAATCCGCCAATACACATTTAAAGAAGAAGAACAAAGTTAGACTATTCAAGCAGTTAACTGATTATGTGTCAGTGTATGTGGGCCGAGTTGATGGCCTTGATTATAGGTTTGAAATGAGTGGAGGAGGTGAAACATTCAGAATGGTGATCTGCTCTGATTTGGCTGCAGTGTTGAGTAGTGTGAAGTGGTCAGATAGGGGAGACTTGCTTGAGGAGATGATGTTGCTGTTAATGGGATTGGAGAGGATGGGAGTGATGGTAAGCTTTTGCTGGGTTTTCACCCATGTGCGTGTGGAGAGTAATGAGAAGGCTGATGTGTTGGCTAAGAGTGCTGTGAGGCGAGAGGGGGTATATATTCAGGTCCTGCTGGGCCGCAGGGAATTCAAGTCCTCGATCAAAAGGGCTCAATTTTTGGCAAAGGAAGTGGGGTGCTAGTAGTAAGGGGAGCCAATTTTATCACGTAAAGGAAGAAGTAGGGAGTATGGGATGTAGGTTAGAGGAAGTTCTGTGGAGTAGACTACGGTTTGGGCATACAGGTTTGAATGCCACATTGTGATAAGGAGACATGAAACAGGTCTGTGTGATGACTGTTTGGTGGAGGAAACGGTGGAGCATGTGTTGATATTTTGGGAATTATATATCGTAGATAGGGAGAGATTGTGTGAAAGGGTTAGAGAGGCTGGACAAGTTTGGGTGGTGTAGTTTAGGGCTCTTTCACTTTCTTAGAGGAACAGGACTAAGGAACAATTTTGTGTAGTTAGGCTGTGCCTGGCCTCAccctccagtacagtaggtggagGTGTATGCACCTTAAAAGTCAGATGTAATCCACCAACCCAATCCCTAAGAAGAAGAATCTTAAGTCAATTAAAGGTAACCTGCAGTGGACTTGTGAATTTTGTTTGTGTTACGTATGACCAGAGTGAGAAGGTGCTTCGTGTCACGAAACTTGGGTCAAGATCTGTTTCTTGCTTTACTCTTAGGAATAGGgcaccattgaaaggagtgatttaTGTGGTAGTGTTAAGTGTGGAGGTGTAGCAATTGAAGTTGAACattcctggtgtttgtgatgCCTGCCGTTTGGTGCCACGCACACCCATTGGGGAGCATGGTGAAACAGTGGAGTCATTGTCAGTCTCTACCAGACAAAGTGATTTTAGGATATATCAGTTATCCTTTTAGAGATTTTGTGCAGAATCTACTGCGCTGTAATCAGGAGCAACGTTTATGGTCATGTTGCcccagtgtgtaggagggagattcatGTGACTGAGGATTGAAGATTTGGTGGATGAAGTTGTTTGTCAATTGTAGGGGTGCTCATGTTGCTGGGGATCGGGAATCTCTGGTgctagagaggcaggttgaggtggccagagtcagagtagtgcagaGGGTGTCATATGATGAGGCAGTGAATAAAGTGGAGGAGGATGGGTCAAgggtgagggatcctgagaggatcccAGTGAGTAGTAGATTTGTGCCAATACAGACAGATAGGCCAATCAGTGAGATGCTTCAGTAAGGTTAGCTTCTTAGCATTCATAGTAATGGTTATCAACTCTACTGCAGAAATGGGTGTCCAGTGGAGAGGATGAGTTGGGGAGCGAGGAGGAAAGCTGTCAGACAGCAGCCCACCGATGTGGAAGCCTTTGACCCGGAAGTGGTTGCGGAGGTCAGAGAACTCTTCAACAAAGTCAGGACATATGTCAAACCGGCAACTGGGGAGTGGTGTATCCCTTACCCCAGCGAAGCACTGAGACACCCGGCCCAGGACCACATCCTCCTGCAGACCCTGAAGACGTCACTAAATGAGGTGAAGAACCGACTTAGCGATAAGGATCTGGAAGTCTGGCACCAACATACCAATTCCACCAACCATGCCGGGAAGGTCATTGGTACTGTGCGAACCTCTGCCAATGCCGAGATCTGCACTCAGGCCTGGTGCACGTTCTATGAGATCCTGGGCACCTTCAACCTTCTGCCATAGGAGGAGTTGCAAAGCGGGGAGCTGAACACTGTTCACCTGTGTGAGGCTCCAGGGTCTTTCATTGCCGCTCTGAACCACTACCTCAAAACTAGCGAGCACACACGCTACtgggactggagttgggcagCCAACACACTCAACCCCTATCACGAGGCCAACGGAGGGggcaccaccaccacacctcatTGCCAACACGCTGCCCTGGTGGTTCTTTGGCTCGGACAACACAAGCGTCATCATTAGCCAGAGGCAACTGCTGGAGCTGCAGGGCTTTGTTGGTAACATGCTCAGTATTGATGTGGTGACGGCGGACGGGAGCTTTGACTGCCAGGGGAACCCAGATGAGCAGGAGGCCTTGGTGGCGTCGTTGCACTACTGCGAGGCTGCGGCCGCACTCTTCCTTCTGGGCCCAGGAGGCTCGTTTGTACTAAAGATGTTCACTCTGTACGAGCACTCCTCCCTCTGCCTGCTCTACCTGTTAAACTGCTGCTTCCGCTCCGTCAGCGTCTTCAAACCGGCCACCAGCAAAGCAGGGAACTCTGAGGTGTATGTCGTCTGTCTTCACTACGATGGTAGGAAGGCTGTGAGGCCCCTGCTGTCCAAGCTGATCCGTCACTTCTGGCCGGACCTGTCTGCCCGTGAAGCCCTATTCCCCAGCCAGCTCCTCCCGCAGTCGTTCCTGGCGCAACATGAGCAGGCGTGCTCCTACTTCCATGCCCTACAGACAGGGACGATTGGGGAAAACCTGAAATAGTTTGAGGGCCTCAATGAGAAGCAGAGGCAACGACTGGAAAACATCAGGGACTGCACTGCTCACGAGTACCTGCAGCGCTTCCAGGTGAGTTCTCTGCCGCAGGACCGCTGGTTGTCTCGTAACAGTGGCCCCAGCGTGTTGCAGCGTTACGGGTCGGATGCCCCTGGGCCAGAAGAGAGAGCTGCAGGCCCTGGGCTGGAAGGAGCGTGTTGGGAAGGGCCGCAATGCTGCCTGGGTGGAAGGGCACAGGGGGCATGCTGTGTGCTGGCAGGGCCGCTGGCAGAATGTCATATGGACACCTGGTTTGTGATAGTGGGGGCGACCCTCCCTGTAGTCAGGAACTCACCATTCTGTGATGGGGGTTTGTTGAACCACCTCAATGAAGCATTGGAGCAGGCATGCCCTGCCTGGACTCTGGTCCCTCCCTGTAGCTCCTGCCCAATGGTTTGTACCACCTCCATCCTCTCTGAGGTGGCAGCCCTATGTGACATCACTCCCTGCAATGGCAAGGGAAACAGAAAGTGCCTAGTTTTTGGCAGAGCATCGTGTTGGGGGGATTGTGAAGAGCAGGCTGGGGGGTTGGCGCTGGAGTTTCGTTCGGAGCCCTCGTTACCACCTACGGCCCGCACCACTCTGCATGACGGGGAGCCACAATATCAGAGACCTGCTGGGCTGCGTCGTGCTCTCCCTGCACCGCATGGGACCCGGCGacgccctcctccttcccctctccaccTTTACCTGCGTAACCGCTGCAACCGTCCATTGCCTCCACCTGTCCTTCCGCTCCATCACCTTAAAGTGTCCTTCTCCTCCAGGTGCTGCGGTGCTGTTATGTGTGGGGTTCTGTCGAGCTGCCGCTCGACAAATTCCCCACCTCGGTGACGTGCAGGAGCGTATGAGCTGCCTGGCCATTGGGGAGGAGGACACTGACATTCTGCCTCCTGTTGGTCAGAGACAGGTACTGCAGTTTGTTCCCATGGAGCTTCTCAAAGGAGAGCTGACAGAGTTCCTGTGGACCATGAACTCAGCCATCGTCCATCAACGGCTGCACCTGCTTATGAAGGCTTAGCTGGGGTCAACAGAGGGGGCTCTGGGTGTCTCGAGTGGATTGTACCATAGCCTGGCCTGAAAACAAGCACTGACTAGCTAATTTCTCTAGCCCCTACCCCATCAGTGTTGACAGATGTGAAGGAAGTGGATGGGTGGAAGCCCCCCATAAACTTAATCCCATCTGGTCCCTTCAGATCTGTATCACAGAagtgggattgggttgtttttgGACATTGCAACTTTCATTATTTAATAAGGGCACATTTGGTCCCTGTTTGGATGAAAATTAGAGGCAAGCAATGCGGTGAAGTACATTTATTTGATATCTTTTGATTGGTGctgtgattattttttttaaatgattgtcAACAGTTATTCTGTTCAAATTAGGACAACATTTGGTCACATTTCCCTGGGTCCCTGATCTAATGTATTTTTAGGACAGCACAACTCATGTACTGCTGATTCAAGTtatttgaaataaaaaatatatttcatattagTTTCActatttaaataaaaacattatcaTGCAGTTTGTTAGGAGTTAAAATGCCTTTTTTGTGTAATTTTCCTGACACTGTCTAACCAGAAGTGACTAAATACAGTAGATTGTGTAACTGTGTTTTTACCTGGGGACTGCTGTGAAGGTTAGCCGTGCATACGCTGTTTCACTCTGCAGGGgtttgaagaaaatgtagtcttgCCTCTACGGCATCTATACTTAGACCCCATTTACACCTGGTGTTAAACTAAAAATGAATACCTGATTATGTAGGATCTGATAATGTCTGCGGCACAGCTGGCCTTGAAATGTCTCATACCAGTCTAACCTGCATTTCTAGGTTTTCTTTGGAATGATGCATCCAGTAGAACAGCTAGCCTATGTGGTCAGATACTTTATTGAAGAAAATGGTTGGACCAAAATGTTGTGCTTTGGGTTTTGGGAACATGTTGTGCAAGTCGATGTGTCcacaaaatgtgtttttatacATACTTTTGTATTGGTTTTGTACATGTTTTGTTAGCCTTTGAAAAAAACGATTACATTTTTTTAGATTTATGTTCTTTTGAATATTTCAAGTGATTATATTTTTTTGGTGCATGTGGTATTTCCTCAAATATTGACTTCAATGGATTCTTGCCTCGTTTTGCCTTACTTTAGTCATCTTTAGTGAACAGAAACGGAGTAGAGtctaattatttattttcaaGCTATTCATAACAAAGAGCCTGGAACAGCCATTTGTGAATACCAAGAAAAGTCTTCATTAGCAGAAGCTGTCAGGACAATCCTGGTGTCTACATTGGGAAGAGGGTTTTCAAAGGTTTACCAAAGCGAGTGTGAACTCCCAGGGGTGCTCTGTAATGAACACAAGCTGCTGAAATCAGGGTAAAGAAAGATACTGGGAGATGATTCTTCTTTCTCTTTGTTTTGCTCTGAATTTGTTTTTATAAAAACATCCAAAAGCACAATAAAGCAAACGTCTGAGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610155 lncRNA upstream 343 68848040 ~ 68848328 (+) True G538788
TU610152 lncRNA upstream 2905 68845558 ~ 68845766 (+) True G538785
TU609868 lncRNA upstream 139043 68707409 ~ 68709628 (+) True G538565
TU609865 lncRNA upstream 141371 68706919 ~ 68707300 (+) True G538564
TU609864 lncRNA upstream 143248 68705188 ~ 68705423 (+) True G538563
TU610167 lncRNA downstream 3058 68859291 ~ 68859533 (+) True G538799
TU610226 lncRNA downstream 44562 68900795 ~ 68901024 (+) True G538851
TU610228 lncRNA downstream 46148 68902381 ~ 68903425 (+) False G538852
TU610230 lncRNA downstream 46185 68902418 ~ 68903425 (+) False G538852
TU610229 lncRNA downstream 46340 68902573 ~ 68903425 (+) True G538852
XM_021607440.2 mRNA upstream 29902 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 68354 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 166996 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 184279 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 204080 68640790 ~ 68644591 (+) True LOC110526432
XM_021607442.2 mRNA downstream 25357 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 66605 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 82409 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 99032 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 108822 68965055 ~ 68977010 (+) False LOC110526457
TU609930 other upstream 36781 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 143975 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 167019 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1081058 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 1092053 67754556 ~ 67756618 (+) True G537606
TU610240 other downstream 49812 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 139850 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 155373 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 505408 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1160109 70016342 ~ 70019477 (+) True G539959

Expression Profile