RNA id: XM_021607442.2


Basic Information

Item Value
RNA id XM_021607442.2
length 1483
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110526451
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68881590 ~ 68899511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTGACAGTTTAGAGAGGCTTTAGATCCGACTGGGACAAAATTAACTCGGGATTTCCACGTGCTCCAGGAAGAAGGGAAAAATCAGTAGCGACTGAACGATGGCGACTCAAGCACAGCAGCCACCTCATCTACACCTGGCAGAGCTCACTGCAACGCAGTTTCTTGACATCTGGAAACATTTCGATGCAGACGGAAATGGCTACATCGAGGGAAAGGAGCTGGAGAACTTCTTCCGGCAGCTAGAGACTGCGCGGAGAGGAACAGGCGTGGATCCCACACATGCTGCGTTTAGAGAGAAAATGAAGGAGTTTATGATGAAATTTGACAAGAATGCAGACGGAAGAATCGAGATGTCAGAAtTAGCTCAGATTCTGCCCACAGAGGAGAATTTCCTGCTTTGTTTCAGAACATTTGTGGGATCCAGTGCAGAATTCATGGCGGCATGGAGAAGGTATGACACTGATCGCAGTGGATACATCGAAGCCAATGAACTGAAGGGTTTCCTGTCAGATCTTCTGAAGAAGGCCAACAGACACTACGATGACAAGAAACTCAACGAGTACACACAGACAATCCTGAGGATGTTTGATCTGAATGGTGATGGGAAACTGGGCCTGTCTGAAATGGCcagGCTGCTGCCAGTTCAGGAAAATTTCTTGCTCAAGTTTGAGGGATGCAAGCTTTCAGCAGAGCAGTTTAATGTAATCTTCACCTTCTATGACAAGGATGGAAACGGTTACATCGATGAGCAGGAGCTGGATGCACTGCTGAAGGACCTCCATGACAAGAACAAAATAGAGTTGGACTCGACCGGTCTGGTGGGCTATAAGAAGAGCATCATGGCTCTGTCCGACGCGGGGAAGCTCTACCGCACCGAGCTGGAGATCGTCCTCTGCCGCGACTCCACACTGTGATCTTTCACCTATGACCCCTGACAACCCCCCACTGTCCCCCTCCTGGCATAACCAGGTGCATGTATgaccccctcctccactccaatATCTGTAGAGTGGAAGTGAATGTCCACTTGAAGGCATAAGCAAGACCCTCAGCCCACCTGCCCGACTCTGTTTAACTACCTGTCCATTACTTTGCCCCACCccacctcccctccaccccttATCGCAGCGTGGCGCTACCTGATGATGTCATCAGCGTTTGCAGcttttttgttcttttttttttacatgcaatTCTATAGTGAGTTAACCATTACGTATGGAAATAATAGAAGGAATATATGATATGACTATTTATTTGAATGCATATACATTTTGCCTGAATGTCCTTTATACTGTACTCCCTTAGCCTACTCTTTGTTTTTTCACAGTTCGcctgtaaatctctctctctctgtttctatttaCCTCCAATCTCAATGCTATTCGTTTCAGTATGTTGCCTTGTTTTTGAATTGGGTTTAGGCTCATACTGTTTTAATTGAGAAATTATTGAGAGCATCAGTAAATATAGTTGATGAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23908 CALB2; calretinin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610167 lncRNA upstream 22057 68859291 ~ 68859533 (+) True G538799
TU610155 lncRNA upstream 33262 68848040 ~ 68848328 (+) True G538788
TU610152 lncRNA upstream 35824 68845558 ~ 68845766 (+) True G538785
TU609868 lncRNA upstream 171962 68707409 ~ 68709628 (+) True G538565
TU609865 lncRNA upstream 174290 68706919 ~ 68707300 (+) True G538564
TU610226 lncRNA downstream 1284 68900795 ~ 68901024 (+) True G538851
TU610228 lncRNA downstream 2870 68902381 ~ 68903425 (+) False G538852
TU610230 lncRNA downstream 2907 68902418 ~ 68903425 (+) False G538852
TU610229 lncRNA downstream 3062 68902573 ~ 68903425 (+) True G538852
TU610237 lncRNA downstream 5032 68904543 ~ 68904854 (+) True G538856
LOC110526954 mRNA upstream 25357 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 62821 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 101273 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 199915 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 217198 68644828 ~ 68664392 (+) True LOC110526434
XM_021607445.2 mRNA downstream 23327 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 39131 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 55754 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 65544 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 65551 68965062 ~ 68977010 (+) True LOC110526457
TU609930 other upstream 69700 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 176894 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 199938 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1113977 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 1124972 67754556 ~ 67756618 (+) True G537606
TU610240 other downstream 6534 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 96572 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 112095 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 462130 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1116831 70016342 ~ 70019477 (+) True G539959

Expression Profile