RNA id: XM_021607445.2


Basic Information

Item Value
RNA id XM_021607445.2
length 2938
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110526452
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68922838 ~ 68936761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACCgttaaacctcatcgaagaagAAAGAAGCTTGAGTGCCTCTGTTGTCCCTCCGATTTACATCCTCACTCTTTGCTTTTTCTGACATTCTGCGCCCCGGCCACCTGCTCGACCATGGCTCTGTTGAAGTCCAGCAAGGTAATCTCCAGTATTGGGACTTTCTCCCCATCCCTGGGAGTTTTGTCTACCCGTAACAGCTCATGGTGGGGTGGAGTGCAGATGGGTCCCCCTGACCCCATCCTGGGGGTGTCGGAGGCCTTCAAGAGGGACACCAGCCCGAAGAAGATGAACCTGGGGGTGGGAGCCTACAGGGACGACCACGGCAAACCCTTTGTGCTCGATTGTGTCCGCAAGgcagaGGCTCTGATTGCTTCCAAGCAGTTGGATAAAGAGTATCTGGCCATCGGTGGTCTGGGGGACTTCACCAAGTCCTGCGCTCAGCTAGCCTTGGGGGCTGACAGCGAGGTCCTCAAGAGTGGCAGGaaCATCACTGTCCAGACCATCTCAGGAACCGGCTCCCTGTGCATTGGAGCCAACTTCCTGTCTCGTTTCCACAGTGCGTCCCGTGACGTGTACCTGCCCAAGCCCTCCTGGGGGAACCACACACCCATCTTCAGAGATGCTGGCATGCAGCTGAAAGCCTACCGCTACTACGACCCCTCCACCTGCGGCTTCGACTTCAACGGGGCGCTCGACGACATCTCtAAAATGCCAGAGAAGAGTGTGATCATGCTGCATGCCTGTGCCCATAACCCCACCGGTGTGGACCCCAAGCCTGAGCAGTGGAAAGAGATCGCTGACCTGGTGAAGAAAAGGGACCTGTTGGTGTTCTTTGACATGGCCTACCAGGGTTTTGCTAGTGGAGATATTGATCGTGATGCCTGGGCTGTTCGTCACTTCATCGAGCAGGGCCACAAAATTGTCCTGTCTCAGTCCTTCGCTAAGAACATGGGCCTCTACGGTGAGCGAGTGGGAGGGTTCACTGTGGTGTGTAACGATGCCGAGGAAGCTAAGAGGGTGGAGTCTCAGCTGAAGATTCTGATCCGGCCAATGTACTCCAACCCTCCAATGAATGGAGCCAGAATCGCTGCCACTATTCTCAACACACCAGACCTTTATAAAATCTGGTTGGAGGAGGTCCACGGCATGGCCAACCGCATCATCAAGATGAGGGAGCAGCTGGCGGCCAACCTGAAAAACGAGGGCTCCACTCTCGACTGGCAGCATGTCATCGACCAAATCGGCATGTTCTGCTTCACAGGCCTCAAGCCTGAACAGGTTGAGCGTCTGACTAAGGAGTTTTCAGTGTACATGACCAAGGATGGTAGAATCTCCATGGCAGGCGTCACTTCCAGCAACGTGGGATATCTAGCGCATGGAATCCACGCCGTCACTAAGTAAAAAGGAGAATGCTGGGAGAAACAGCAGGGCACGGTGGTGCTGGACACAATCCAAATTAAAATAACTGAAAAATAGCATTTTGTGTCATTTTACTCTCCCTGCCCTCTCCACCCAGACTGTCAATTGTTCAACTTTGACCTCAACCTACCGCAATGAGGGTTAAATGGTTAGTTCCCTGTGACCTCCCCAATGAGGCCACCATGTCAAAGGTTGTTTAGTGAAAGTCCAATGATCTGCCCTACATTTGACTAATGAGCTGATGTCTCTCTTCTATGCTTATTTATTGTATATCAAAGGTTAATATTAATTAACTTAACCTGTCATTATTAAGCCATGTATTAACATTATATTTTAAACCTACTCTGCCTGCTGTGGTCCAAATTACTGTAAGGCTACAGATGAGTTTACCAACACTTAGGCTCTGTTGTGTGTGAACTCTTGTCTGTCATTGCATATTTCTGTAGGATGTGAAAGTTCAACGTTTCCTCAACACCAGTAGAGTAGCAGAAAACAATTAGTTATAAGATAGTGCCAGACAATCTTTAGATGAGATAGTCATTGATATTTTAATATGCTTTAGAAATGGACAATAATGTATGATCATTCAGGCCTTTCACTCAGCCTCTCTTGCATTTCCACTTGCATTATCTTGTCTTCGATACTCACTATAAATAATTATATTACTGTAAACGTTTTGTGCTTTTTGCGCTAAGAGCAGAGTCTACTGTGTTTCTTCTAAGTGTTGATGAGtgagcagtcagccagccagtcttaAATGCCCACTGAATgttcctctcacccccccccccccccccaagcaatGGTTTATGAGGTTTTAAATGTGCAATATACAGAAGTCGctctgtcatttcctggttgctaaaattctaatagtttgcctaatctCAGTTTGACGAGTAATGTttagaatcattgtaccatctaaaccgctgtggaATATATCTTCAATAACCGAAAgtgttgtattttcagctgttggtgtacaaaactgaaagtaagaTGCAAAAATGAAAGTTAATGGTAAGCAGAGACAGCgcacagaacagatctactgcttcttagacttgcttacAATGAAAATGTCTGATCTAACTAAACAATTCCATTTGAATTTGGTCCAAAAAGTCAAATTGCAGCTTTAAAAGGATAGACTGTCCTATGATGGTGCTCTTGTATTTCCACAAGAAAAGGCATTTTACAAGTGTTATTTAGATCACTGGGCGACTCCTATCCCCTCCGTTTCAGAACCAAGAGGTTATAGGACTTCTATTAATATATATAGAAAGTTGTATAGACAGTGTTTTGCTCCAATGATCAGCCTTTGAacattttctctgtgtgtgtcttcctgaTTGTAACAAGACAGATTGTGCAAGGAAATTCACCTTTCTGCTGTCTACTCATGAAGCTTAAGCTGCGCTGTCACCATTTTCGGGTTAGCgcaaaaataataaaacatggaGCATCGGTCAAGTCTTTCTCTGAACAATTAAAAAAATATCTATCATTGAAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14455 GOT2; aspartate aminotransferase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610250 lncRNA upstream 6538 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 8802 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 11301 68911221 ~ 68911537 (+) True G538864
TU610244 lncRNA upstream 12006 68910594 ~ 68910832 (+) True G538863
TU610239 lncRNA upstream 16928 68905618 ~ 68905910 (+) True G538858
TU610288 lncRNA downstream 24454 68961215 ~ 68961454 (+) True G538906
TU610289 lncRNA downstream 24904 68961665 ~ 68961869 (+) True G538907
TU610259 lncRNA downstream 54077 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 82088 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 105860 69042621 ~ 69044027 (+) True G538931
XM_021607442.2 mRNA upstream 23327 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 66605 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 104069 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 142521 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 241163 68679317 ~ 68681675 (+) False LOC110526436
XM_021607446.2 mRNA downstream 1881 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 18504 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 28294 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 28301 68965062 ~ 68977010 (+) True LOC110526457
XM_036980841.1 mRNA downstream 42136 68978897 ~ 68988139 (+) True LOC110526456
TU610240 other upstream 15991 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 110948 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 218142 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 241186 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1155225 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 59322 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 74845 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 424880 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1079581 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1099433 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile