RNA id: XM_021607446.2


Basic Information

Item Value
RNA id XM_021607446.2
length 2820
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110526454
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68938642 ~ 68946874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTTTGTTTTTAAAGACGTAATTTTACATTGTCACATGATCACATCCCAATCAAGTCACATGCCACCGTTGCTTGTTCAGAAGGAATTTCATTCCACGTGCGGTTGTTGCAGAGAAACACAAGAATcggagagacaacagagagATTGATGAAAGGGTTGACTGCTGGGTGACACTACATCCACTTTGAGGATAAACTGACAAGCAATCATCTGTGTCCTAAATGTCACAAGAGCCACAACAAACTTTCAACCTTCAGACTTACCCCTCAACCCAAACTCTGAATACCCGCAACTCAGCTCTTTAGTGTTGAAGTCTGCATCGAACAGAGTAGGGTGAATTTGAGGGTGTTTTAGATCGTGTTTTTGGGACTGTGCCTGCCGGGTTGTGTCCCATGGCGATTAACAGTGAGGCGGGGGACTGGGCCGAGGCTGGGATTGAAGATGCTGGTGAGAGGGCGTGGCTACTGCAGAGCCCCGTTGTGGAGTCCGTTCACCCCCCTTtgtcagacagggagaggagtggaggggtgtcTGCCACAGCCGCTGTCTTCATTGTGGTGAACGCTGCGCTGGGGGCAGGACTACTCAACTTCCCCGCCGCCTTCAACATGGCCGGAGGCGTGATTGCAGGGGTGGTGCTACAGATGTCCATGCTGAGTTTCATCATCAGTGGTCTGGTGATCCTGGCATACTGCTCCCAGGTCAGTAATGAGAGCACCTACCAGGAGGTGGTGCGGGCCTCGTGTGGGAAGGTCACCGGTGTAATCTGTGAGGTGGCCATCGCTGTCTACACCTTCGGCACCTGCATCGCCTTCTTTATCGTCATTGGAGACCAGCTGGACCGCTtGATGGCTGCAATAGCTCATTTGCCAGACGGTGTGGTCGGTGGTCACTGGTACATTGACCGTAAGTTCACCATTTGTGTGACCGCCGTCCTGGTCATtctgcctctctccatccccaaaGAGATTGGCTTCCAGAAATACGCCAGTGCGCTGAGTGTTGTTGGCACCTGGTATGTCACCATTGTGGTAATACTGAAATACATCTGGCCTGATAAAGAGATGACCCCTGGCTACATTCCAACCAGCCCGTCCTCCTGGAGTGCAGTTTTGAACGCCATGCCCACCATATGCTTTAGCTTCCagTGTCATGTGAGCAGTGTGCCAGTGTTTAACAGCATGAGGAGGAGTGAACTCAAGCCCTGGGGAGGTGTGGTCACCGTCGGCATGATCATCTGCCTCTTTGTCTACACTggcacagGTGTCTGTGGCTTTCTGTCATTTGGGTCTAACGTCAGTCAGGATGTGCTGATGTCATATCCTCCTAATGACATCGCCGTGGCGATCGCAAGGGCCTTCGTCGTCATCTGTGTTATCACCTCCTATCCCATTCTACACTTCTGTGGCCGGGCGGTGCTGGAGGGGCTATGGCTCCGTTTCCACGGCGAGCAGGTGGAATTGTGTGTGAGGCGTGAGCGGAGACGCAGAGTGTTGCAGACGCTTGTGTGGTTCACGGTCACACTCGTCCTCGCACTCTTCATCCCCGACATTGGCCGAGTCATCTCCCTCATCGGAGGACTGGCAGCCTGCTTCATCTTTGTCTTCCCAGGTCTGTGTCTGATTCAGGCAAAGCTCTCAGAAACAGAGGTTCGATCTGCTAGCTGGCATGGGATGGTGGTCTACGGCGTCATCATGGTAACCATCGGCACTTTCATCTTTGGCCAGACCACCACCAATGCCATCTATCAAGACGCCATCCACTATTCGGACAGCCAATAGAATTCTGACCAGGAAGACTCTTTGCTGGAGGAGGATGCAGGTCTATGCTGCTATTCTGAACTTTATTGACTTGTATCAGGATGTCGAGGATCCAACACATACATGCAAACACACTCCCTCTTGTGACCTCTCCTGCACATCTCGTTGTCTCCCTGATGATGAAACCGCTCCATAGCAAGGACTCGTGTCACCTATGGAGCGATGCTCTAGGATTAGATGATTCCTGAGAGCAACCTCTGACAAGGGACCTACCTTTTCAAAAAGATTATGCAAATGTTATGTTTTTgattttaatttattttcacCCCGTTGTGGGCTGCAGTACCAAATCTGTCTTGACATTCTCAACCCCTCCCTATGCCTTTCCCTGCTGGTCCAGCATGCACCACTGCACTACAGGTGGCATCCCATCCTTCAAGAAACTGGGCAGTGGGAGAGGGTACCTCTCTCTAATTGGTGTTGTTACTGATGAGTAATGAACATACTGTTTTAAGAATGTGGCCAAACATTTCCATCAATTTTTTTTTATAGTAATTTTACAATTCCAATGATCAAGTGGTTTGAAGACGTATCCTgcaactgcagttctgaaatctATGTAATGTGGCAAGTGTATTATAATTAAGTGATTTTGAATGCTTTGAGATTTCAGAAGTCTGGGGTCTCAGGCTGATTCCTGTGGTTAAATGATTGTATATGGCCTAGCTTTAAACAGACAGATATTTTAAATGTGCTTTACTGATAGAGATTAgctatagactacagacagagGTAAGGGACACAAATCTATCATGTTCAAAGGGATTGTTCCTCAGGGCAGCAATTACTGTTTTACAATGACTTGAATGAGATTGGAAATGCTTGAAATTCAATtactttttattgttttattccaTAATTGGAGCCAAGGGAAATAGTTTTTTCTGAACTGAACCAATTTAGTAATCAGGTTGAACAATATGCAGTCTTATTGTCATGAATTATCCTGTTATCAATCTACAATTTAATAAACATGACGGTTTTGTCATTGAATTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610250 lncRNA upstream 22342 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 24606 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 27105 68911221 ~ 68911537 (+) True G538864
TU610244 lncRNA upstream 27810 68910594 ~ 68910832 (+) True G538863
TU610239 lncRNA upstream 32732 68905618 ~ 68905910 (+) True G538858
TU610288 lncRNA downstream 14341 68961215 ~ 68961454 (+) True G538906
TU610289 lncRNA downstream 14791 68961665 ~ 68961869 (+) True G538907
TU610259 lncRNA downstream 43964 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 71975 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 95747 69042621 ~ 69044027 (+) True G538931
XM_021607445.2 mRNA upstream 1881 68922838 ~ 68936761 (+) True LOC110526452
XM_021607442.2 mRNA upstream 39131 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 82409 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 119873 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 158325 68775474 ~ 68780317 (+) True LOC110526444
XR_005052454.1 mRNA downstream 8391 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 18181 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 18188 68965062 ~ 68977010 (+) True LOC110526457
XM_036980841.1 mRNA downstream 32023 68978897 ~ 68988139 (+) True LOC110526456
XM_036981775.1 mRNA downstream 60181 69007055 ~ 69018414 (+) False LOC110526955
TU610240 other upstream 31795 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 126752 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 233946 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 256990 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1171029 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 49209 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 64732 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 414767 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1069468 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1089320 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile