RNA id: XM_036980842.1


Basic Information

Item Value
RNA id XM_036980842.1
length 3052
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110526457
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68965055 ~ 68977010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGAAAATCTGATGCGCCGCTCCATGCTTCGTTCGGTGTTAAGTTCGCTGTACGCGAGACATTAGTTAACAGGAAGAAAAATGCATTGGTTCTGTTGGATGAAAGATGTAGTAGGAGGGAGTTTTTAAACTGCCTTTCGAATATTAGTTAAGTACATGCCCTGAGTGATAGCTTGCTTACAATAATATATCGATGAAACAAACTCAACTTGAATAGCGTTCCAGTGTTGCTTTGAGGACAACTCACGAACTAATTGACGCTCCCTACGCTTGAAACCATCCCAGCTTTCAGCCCGCTTCCAACGGCTCTAGCCCATTGCTTGGTGGCTGCTTACTGTGTTCTGGCCCACGGGGAGACGAACTGTACTGACCACACTGACCCCGTAGTTGGCACATCCTTCCCAGGGTTGCAACTATCCCCGCGGTTGCACTGGAGTAGGACGGTCGAGGGCATAGGCCCGGTGCTTTACAGCATTTAGGGAAACCTCCCATTCACTATATCATCCAACCGATTCAGACAGGTTATGGAGCTGGAGGTGAGCCAAACGGAGCTTGAAGGTTCCGACGCTCCCCAGTCTCAGAGACACGAGAGGAGCCTCGGACTTCTCACCACGAAGTTCGTTACTTTGCTGCAGGAAGCGAAGGACGGGGTGCTCGATCTCAAAGTAGCAGCAGACACCCTGGCCGTCAGACAGAAGAGGCGCATCTATGACATCACCAATGTACTGGAGGGCATTGGCCTGATCGAGAAGAAGTCAAAGAACAGTATTCAGTGGAAGGGAGTTGggccaggctgtaacacaagggAGATTGGTGACAGGCTGGTTGACCTGAAGTCGGAGCTTGAAGATCTGGATATGAGGGAAAGTGAGCTGGACCAGCAGAGGGTGTGGGTCCAACAAAGCATCAAGAATGTGACCGAGGACACACACAATAGTCTTCTGGCCTATGTTAATCATGAGGACATCTGCAGCTGCTTCAAAGGTGATACCCTCTTGGCGGTGCGTGCTCCCTctggtacgcagctggaggtgcCCATACCTGAAGCTGTTCAAAACGGTCAGAGGAAGTATCAGATCCATCTGATTAGCGCTGCTGGGCCCATTGATGTTCTGCTCATCAACAAGGACCCAGTTAACTCAACACCTGTGGTGCTGCCAGTCCCGCCGCCTGAGGAAATGCTGCAGAACACCAAGTCTGCTGCAGCCTCTGCAGACACAACCATtaacacacccactcacacattTGTCAAGACCACCCAGAGTCTGGCCACCGGCAAGCCTAAAGCACATACAGCAGCTAAGCCATCAGACAATTTGAGCACTGAAAAATCTGTACCGCAACCACCATCATTGGACACCCGGTCCCTCCAGTCTTCTGCTTCGTTGGACAACAACTTCACTGTCTTTGAACCAATCAAATCCGATTCATCTGACTTGCTGGATTTCCCCAAATACTTTTCTGACATGTTTGACCCCGCTAAAGagaTGGTGAGTGCAGATCTACTAGAGGAACTTATGGCTTCAGAAGtgtTTTCTCCACTCCTCCGCCTTTCCCCCCCCCCGGGTGACCATGACTACATCTATAACCTGGATGAGAGCGAGGGCCTCTGCGATCTCTTTGACATCCCCGTCCTCAACCTTTGACCTATGAACCTTGCCAGAAGGCTTTTTAGAAAGACAAGAACAGTTTTTAAACAATTCTTTGAGTACTAACAAAACGATGAAGTGGTCTATTTTTGGAGTCTTGTAATATAAGCTGAATTGATAAACAAACCGTTTTTGATAATTTTCATACTCTTTATTTTTGTCACGTCCCCTTCGTTGATGTCTGAACAGGGAGAGCAGCCATCCCCCTACTGGCTTATAAGCTTTAATGATCTCATGGAATATATTGTTTTGATCTGTGCTGCTGAAGTGGCAGTGGATGTGTTTTAAAAGTTGAGTTGTGCTCCATTTGGAGTGAGTAAAGATGGCTTGGGTTGAGTGAAGGATAGGAAATTAATGGGATGCTCAAGGCAAAATCATATACGATACCTAGGCACTTATGTACATCCGAAACTATTGGATAGTAAGCAATAAGACAATTCCAGCTAGTCTTTTAGATGGCAAGGTAGAGTTATTGCCATATTGCAGACCTATTTGATCCTTTCAGATCTACATGGTGACTAAGGGTAGGTAGGGATTGGTGCTGTGAGGAGCTTCATTGTTTGTCTACGGTCAATGAGCTGTGCATGTGAGGAGTGCAGCTACTCCATTGCCCACATAGTGGTCTTAGAGTCACAGCGGGAAGAGAAGATCAGCTCCCTCACCTGCCGCAACCTAGTCTCTCCTATGAGTCAGGCACACAAGACCAGCCACAATATACTGACAACATGTAAATCCATTAAAAGCCTTTACCAGTCCTAATCTAGTTATACTATTGATGAGGCTTCAGTTGCTGGTGCATGTTATATCTTGTCTGTTTCTCCCTCAAAGTCTGTGTCCATGTGGAGCACATTTTTGTTGTAATTTTCACGTCTCAACACTGATTTCTATTATAAAATGCTCTTTATTTTTGGTGTATTTTTCTATTGAACTGACACTGTCAaggaacagtacagtacatacattttttttgtctcgGTTATTTTACATCCGAATCCAGATTCAACTATGATATGTGTTCTTTCAGGAAGTTCAGAAGTGAATATTTTTCAAGTTTAGTGTAAAATCTGCTGTATCATTTGTATAGTTTGGTTGTATTGCATTTTTCTGTTTGTAACCTGCTCATGTTCTGATGAGTAAATTCATGAGATCACATCGGGGCGAACTGGAACCAGAAATCGGTCCTGGGAATTTTTGTCACCCCGGCCTATCTGTTCGATGCCGtatatttttggtcagtgtctGTGAAATGGGACGGCAGCAAATATGCAAAATTATTGTGAGAAATTTAAATAAAGTTTCTAAACTATTCTACAGGTGATTATATTGGTTCTATACATGTGTTAGTTTTTCTATATTATAGGGGGTTACAATTTGTATATCCCTTATCTCTTTCAATTCTGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610289 lncRNA upstream 3193 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 3608 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 48762 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 51026 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 53525 68911221 ~ 68911537 (+) True G538864
TU610259 lncRNA downstream 13828 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 41839 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 65611 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 67060 69044070 ~ 69144935 (+) True G538891
TU610370 lncRNA downstream 238557 69215567 ~ 69216547 (+) True G538977
XR_005052454.1 mRNA upstream 9677 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 18188 68938642 ~ 68946874 (+) True LOC110526454
XM_021607445.2 mRNA upstream 28301 68922838 ~ 68936761 (+) True LOC110526452
XM_021607442.2 mRNA upstream 65551 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 108829 68848671 ~ 68856233 (+) True LOC110526954
XM_036980841.1 mRNA downstream 1887 68978897 ~ 68988139 (+) True LOC110526456
XM_036981775.1 mRNA downstream 30045 69007055 ~ 69018414 (+) False LOC110526955
XM_036980844.1 mRNA downstream 53872 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA downstream 53872 69030882 ~ 69133616 (+) True LOC110526458
XM_036980847.1 mRNA downstream 171320 69148330 ~ 69189966 (+) False LOC110526459
TU610240 other upstream 58215 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 153172 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 260366 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 283410 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1197449 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 19073 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 34596 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 384631 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1039332 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1059184 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile