RNA id: XM_036980841.1


Basic Information

Item Value
RNA id XM_036980841.1
length 1678
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110526456
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68978897 ~ 68988139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGAGCAGTCTAATGTGTGTGGGTGGCGTCTAAGAGTCAGAAAATATCCCTGGGTGGCGTCTAAGAGTCAATATCCCTGGGTGGTGTGGTTGGTATCTTTAAATGGTGAAGAACACATTTCTTGCAGCCCAGTCACCATGATAGGTTCGGTGGTGTTGTTGCTATTTTTCCTCCTTCTGGTCTTCTTCATCAGGGTCCGCAGACCTAAAAACTTCCCCCCAGGACCCCGTCCCCTGCCCATCCTCGGCAATCTGCTACAGCTGGACCATGTCAACCCCCTCAAAGACCTGGAAAGGCTGAAGAGGCGCTATGGTAACGTGTTCAGTCTGTACATCGGATCACAGCCTGTCGTGTTTCTGAATGGCCTTGAGGCAGTTCGTGAGGCACTGGTAACACGCACAGCGGAATTTTCAGGACGACCAAAACATCTCATGATCAGCGACATCTCAGAAGGCAAAGGGGTCATCATGGCAGATTTTGGCTCCAGCTGGAGGGACCACCGACGCTTTGCTCTGACCACGCTGAGAAACTTTGGTCTGGGCAAACGCTCCATGGAAGAGCGCATCCTTGAGGAGGTCTCCCACATCTGCTCTGCGCTGGAGCGCAATGCTGGCAGTTCGATGGACCCTCAGCACCTGTTCCATCTAGCAGCATCTAACATCATCTGCTCACTGATTTACGGGGAAAGGTTTGAATACGACAACCCAGTCTTCCTCGCCCTCATCAGTAGGATACAGGATTTAACCAAAATTGCTATCGGACCTTGGGCCATGCTCTATGATATCATACCTGCCCTGAGGTCCCTACCCTTGCCCTTCAAGAAAGCCTTCCACATCTATGGTGAAATCAAAGAACATGCACAGAAGGCTGTGACCAGCCACAAAAGTTCAAGGGTCTCAGGAGAGCCCAGGGACCTCATTGACTGCTACCTTGACCAGATTGACATGACTGGTGATGGAGGCTCCACATTTAATGACGCTCAGATGGTGTTTCTACTAATTGATCTTTTCGTTGCTGGGACAGACACCACTTCCAACACCCTCCGCTGTGCCATGCTACACCTGATGACCAACCAACACATACAGGaacgCTGTCACCGGGAAATTGAGAACGTTCTTGAGGGACGTTCATACGCCTTGTTTGAGGACCGACACGCCATGCCGTATGTTCAAGCGATGATCCACGAGTCACAGCGGATGGCTGACACTGTTCCTCTTAGCGTGTTCCATATGACCTCCTGCAACACGCAAGTACAAGGCTTCCAGCTGCCCCAGGGCACAATGGTGATTCCTAACTTGTCCTCTGTGCTCCATGAAGAGGGCCAGTGGAAGTTCCCGCAGGAGTTCAACCCTGACAACTTCCTCAATGAGGACGGTGAATTTGTGAAACCAGAGGCCTTTCTGCCATTCTCagcagGCTCTCGTGTATGCCTGGGAGAAGGGTTAGCGCGCATGGAGCTCTTTCTGATACTGGTGACCTTGCTTCGACGTTTCCAATTTGTCTGGCCTGAACAAGAAGGTGCGCCCGACTTCCGCAAGGTTTTTGGCCTTGCACAGGCGCAAAAACCCTACCGTCTAGGAGTGCGCCTGAGGAGCAGCCAGTGATGGTAAACTACCGTCAGTTTTCACTGAGAAGCAATATCACTAAAGCAGCACATTAAACAATGCTGTACCCTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610289 lncRNA upstream 17028 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 17443 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 62597 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 64861 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 67360 68911221 ~ 68911537 (+) True G538864
TU610259 lncRNA downstream 2699 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 30710 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 54482 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 55931 69044070 ~ 69144935 (+) True G538891
TU610370 lncRNA downstream 227428 69215567 ~ 69216547 (+) True G538977
XM_036980843.1 mRNA upstream 1887 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 1887 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 23512 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 32023 68938642 ~ 68946874 (+) True LOC110526454
XM_021607445.2 mRNA upstream 42136 68922838 ~ 68936761 (+) True LOC110526452
XM_036981775.1 mRNA downstream 18916 69007055 ~ 69018414 (+) False LOC110526955
XM_036980844.1 mRNA downstream 42743 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA downstream 42743 69030882 ~ 69133616 (+) True LOC110526458
XM_036980847.1 mRNA downstream 160191 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 160192 69148331 ~ 69189966 (+) False LOC110526459
TU610240 other upstream 72050 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 167007 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 274201 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 297245 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1211284 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 7944 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 23467 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 373502 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1028203 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1048055 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile