RNA id: XM_036981775.1


Basic Information

Item Value
RNA id XM_036981775.1
length 5666
RNA type mRNA
GC content 0.57
exon number 25
gene id LOC110526955
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69007055 ~ 69018414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGAAGTCTGAAGACCCTGGGCCTGCTGCCCAGTAAGAGCATGggcctcccctccctccagaAGCCTGTGGACAGGCACCGTCTGTCAGGCTTCCTCTACAATATCTCCATGTACCTCCAGGAGATGGGTGCTGAGCTGGAGGAGCGACAGCTCGTCTCTGACGAGGAACAACTGTGGGAGAAGGTATTGCAGTCCTTTATCCAGTCAGAGGGGGGCGCTGCGCTGAACCAGTGGGACACCCGGGAGCCCCCCAGGCCCAGCGTCAGACTCCAGGACTGGTTCCTGTCCCTGAGAGGCAGCCCTCACTGGGACGGGCTGCTGGGGCTTCTGCAGAGCCTCATGTCCCTGTCTGAGCGGCAACCCCACAGGCCCCTGCTTGACTTCCTGTCCCAGAACTGGAGGACAGTGAGTGCCCTGCTTGAGGCGGCCCTGCAGGCGCTGGTCAGCGGGACCTATGGCCAGGCCAGCGCCGGGCTGCAGGGCTTCATCTGTGCCCTTAGGGGCCGCAATGAATGTGCCTTCAGTGTCAGCTGGCTAACACAGTTTCTCCGCTTCATGGAGACACGCAACTGGAAGCCCGTGGTGAACCTGCaccctgcggggatgggggccaACCAGAGAAGGGGCTCAGCTGCTTTTGGGCGCCTGAAACCCTTCAGCATGCCCCCCAAGGCCCTGAGAGATGAGGGGTTGTCTCGGAATGCCACTCAAGGGGATGTTGGGGACAGAAGGGACATGGGGGGAGACCTGGACTCCCTTCATACACTGCTCCTGCAGGCTTTATCACGCTCTGATGGGGGGCAGAGGGCGGGGCAGCTGGCAGAGCAAAACCCTGCCCTGCTGCAGGGATTGGACGGCCTCAGAAGGGGATTCTTGCACAGGGTGGGCAGCTCCGTGTACGGCAACCTGAGGAGAAAGGTGTCCCGTGTTACCATGGCGCTGCTTGATGATGTCAGCAGCGTGGTGGACGTGACACAGCTCAAACATAAGGGCAGATGTTCCGTAGGTGACCTGAGACAGCTAATCTTATGGGGGATTAGACATAATGTCACATGGAATGCTCAGGCTCTGGGCTTCAACTCACAGGGGCCTCCCAgcacccctcccttcctctcctgccCAGCCATAGAGGGTGAGAGCGGGGACCCTAGACCCCCACCACGCCCCTCTCGCCCTAGACCAGCCCTGTCACAGCGCAGGGCACCCAAACAGAAACAACCACCCACCTCAACCCCAGTACCCCGCAGTTCCCGTCTCCTCAAGCCCCAGTCCGAGGCAGTAGAAGTTGGCCACAGCCACCTGAGAGAGATGGGGTACTTTGCCTCAGCAGAGATCCTGGAAGCAGCGTGTAACGCCTCTATCCCAGGCCTTACAGGTGTGTCCAACTTCACTGTGTTCCTCTACTGTAACCTGTTTGACGGGGACGATGGGTCTGTGGACCCGGAGGTTGGTCAGGTTGGACCCGACCTACACGCCACGTGTTCCGACGCCGCCTGGTACCTGTCTGCAGCCGAGGATGACTTCCTGTGGGTCCACGTCTGCAGCGAGTTCTTCGCTCACCAGTTCAACAACACTGTGTGTGCCAACACCTCCTTTTGGCTGCAGAGAGCACACCAGGCTGCAGAGATGAAGGACTACCACTACTTCAACCAGTCCAGTATAGGTGACCTGTGTGTGCAGCTGTcaggggaggtggtggagggcGGGGGCAGCCCAGGGCCTGACGAAGCCTGCCTGGCCCAGCTGGGCACCAGGTCACTCAGCGCCCAGGACTTCAGACGCTGCTTCCTGCCCAACACTTCTGCTCTGGTCTCAGCCCTGTGTGGCAGCGAGTCCCCTGAGGCCCATCCCTCCCACCCATCCCTTCCGGAGGGCAGCTGGGCTGCAGAGTACTGCTCCAGACTCCACAACTTCTCCCACCCTGAATCCATAGAAGACACATGTAACTACAGGAAGTGGAGCCTGCAGCATTTCACCAACGCCACCCTACTGGAGCTCTGTGGCAGTACAGAGGGGCTGAGGGAGTATGTTTGTAGCAATGCCACCCTCTACCGCCGGCTACTCTCAGCCTATCCTCAGTTCTCTGACCTTTGCGTTGACCTGGATGTAGAACAGGAGGACAGGAAGTGCTTCCTCCAGTGGTTCTTTGACATGCTCCCGGCGCCGTACGACTTTGACACATCACAGCTGTGTGTGAGTCCTGCTCCGCTGCTCTTGGAGGCACTGCACAGGctgagtgtgtgtgaggtggatgggGGTGAACGCGGGGGCTGGGTTGGGGCTGTGGGTTACGTGCTGAGGGTACTGGACTTTGTGGTTGGGCTCTCGGCGGGATtggatgagggggagggggaggtgaggcAGGGCCTGGGCCAGGCCATCCTCCTTTCCAGTCTCCTTGACAACGCTTCATTCTGGGCAACTCTGCGTCCCGACGCATCACTGAGCGTGCTCCAAACCGTGGGCTTGTTCCTGCGCAGGGAACAGAGCGCAGCTCTCAAAGAGGACCTGCTCAGCTGCTTCAGTCCTGTATTATGGGACCTCATTGAGAGAGAGGACAACTCCTCTGCCCTCAGAGTCCTAATGCAGGAGTACCTCCAAATGCCCAGGGAGAGTATCCGCACACTGGTGATGTCAGCAGAGAAAGATGCGGTGAAGAGGTTTCTGTCTCACATGCACCAGAGCTGGGACCAGCTGCACGTAGAGACCACTCAGAGAGAACTGCAGGCCATGGAGACCATGACGTCCGCCTTCATCCACAAGTTCCCTcgtgtgacccctgacctcttcGTCGACCTATCACAGTTCATACCTTTCATGTCCGTCTCTGACATCATGAGCTTCCCCACCTCCCTGATGGTCAACACCAGTGTGTTGATGGCGATCCGTGACCACAGCACAGAGATGAAGTCTCCACAGAAACAGGCATTTGTGAAGAGGCTCCTGCAGTCCAGTGTAGTGGGAGATGTCCCTTCCTGGCCACCATATTTCCTCAGCTCCATCCTCCCACTGCTCCCACATCTCCCAGTCAGCCAATTTCAACAGCTGACATCAGACCAGTTACCAGTGTATTACACCAGAGAGACGAGGGCATTATTTCTCAACAGGCTGGGAGTTCTGGTTTGTTACCTGAAACCAGAGGAGCTGCGTCCGTTTCTGCTGGCTTCCCCTGTGTCCTCTGCTCTTTGGCAGCAGctagctctctgtgtgtctgagggACTCATCAGTGATTCAGGCAAGGCGGTGCGGCCTCTGAATGCCAGCACTCTACCTCCTCCAGCACTGGCCACCCTCAGGGGTCTACTGCCCCAGCTAGGGTCTTCCTTCCTGCAGTCACTGCCCTCACTACAGCTCTTGGACCTGCTAACACAACCAGGTCTGCCCAGCTTCTCCCCAGCACAGCTCACCATGGATACACTGTGCAGGCTGAAACCCTTACTGCCTGGCCTGTCCCCTGCTGTGCTCAGAGGCATacactggtctgagatcagtggAACCACTCACTGCCAGTGCTGGCACACTCTACTGGCTGACCTGAAGCCTGCCCATAGAGCCATGCTCCACAGGGCACTGCAGGAGGCTTTAGCCAGCAACTCAAGGAACTTCACAGTGCAGCTCCAATGTCTCCTGCCGTTTGTGCCCCTGAGGGAGCTGATAGAGGTTCTGGATAGAGAGACATTCCTGAGAGATATGAGCCTGTACAGAGACCTGCCCTGGTCCCCCCAACAGGCTCAGCTACTTTTCAAGAGGATCCATCAATCTGAAATCATTACCAGAGACACTAGGAAATGCGTTGTAGAGGAGCTGCGGAAGAGACCAGAGGAAGACCTGGATGGTATAAGCCCCTGGTTTGCTGCAGAATTACCGGTGAACCTGATTGAGAGCCTGTCTAATACTTCACTGACAGCCATCCTGGCTCACATTCAGCAGCACTTTGTGGACTTCCTCAAGCTGCCCCGTCATAAGCAGATGGCCTTAGCAGAAAAGGCCATCACTGTGCTGAGCACCTCTCAGGGCCTGGCTGAGAGGGAGCTCAGGGTGGCCTCTGTGGACCTACTGGGGCCCCTGTTGCCCTTCCTGGACAGGGATACCCTGGGGCTGGTGGACAGAGGGGCCCTGGGGCTGCAACTGGATGAGCTGAGGGGGTACTGCCTGCCCTGGGACACCCTGAAGGACTTGGAGATGGTAGAGTGGGAGGCCTGGGGTGGTTGTGAGCTGGTTATGGCAGCACTGGGCCTGTGGGTATATGTCATGTATGCATTTATAACAGaaagctggtgtgtgtgtgtttattgtagAGAGGCATCGGCATGGACGGTTGGTGATGTGGAGCTTGTTGGCAGACTGTTGTTTactctctctccaaaacagaTCAACTCCATCCCACTGGTGGTGTTGAGTGCAGACACGGTGGAGGAGGTTCTGGCAGGTCAGTGGCGCTGGGAGAACAGTGATGTGGGTCAGGCCTGTATGTCCCAGTGTGTGGACCagaagggccagagagagaggatccACAGTCTGATACGGGGGGTTGTCAGAGCACAGAGCAGGAGAAAAGTCCCAAGCTGTGGTGACATAAGAGGCACCTTCCCCTCAGCATGGACAGCCAATCAGCTGAGCCGGATGGCAGGGGAGGAGTTGAGGCAGTGCGTGGAGGTCATAGGTCAGGACGCTTCACTGAGCCCTGAGCAGCGCCGAGCACTGTGGGTAAAGCTCAGGCAGGCCTACAGTCCAGTTAGAGGCCTGAGACCAGAGCAGGTCCTGGGGCTCGGCTGTCTGGTCACtgagctgggggagagagagctccAGGACATTAACCTGACTGACCTGGGTGTCCTGGCCTACCTGGGGGCTCTGACCGACTGGAGCCCAAAAAAGATGAGAGCAGCAGTTGTTGGTGTGATGCGGAAGCAGAAGTTGAAGGTGGAGCAGCTCGGAGCTGTAGAAGTGGCTTCTCTAGGACACCTGCTCTGTGGTTTAACACTGTCAGAGATCAACAGACTGGACCCCTACAACCTCAGCATGGCTGCTCTGTTCCTGAGGGAGCTGGCCCTGCCGTGTTCAGAGCAGCAGATGGAGGCTCTGACCGCCCGTCTCTCCAGTCCTCAGGCCTTTGGCCCCGTCAGTACCTGGGGCCCAGAGGTCTTCACTGAGATCGGCACACTAGCAGcgGGTCTGGAGGACATGGTTCTGTCTGCTCTGGTACAGGAGCAGATGGAGGGGCTCATCCCCGAAGCTATCGCCCTGATTCCCCCCACAAAGATGGCTGTGGTATTCAGTGCGGTCCAGCTGTCGTGGCTGAATGTGGAGCAGGCGTGGGTGGTCACAGAGAAGCAGTGGGCGGAGCTGAACAGTGGGCAGAGACATGCCTTGGGCCTGGCGCAGTATGAGGGGGATGTCCTGTTAGAGCACAGAGGGAGGAATGTGGCCCCGGCAACACGGTCAGCTGACAGCCTCACTGTGTGCTTATTGTCTCTATGCTGTATGTTATGGCAACTATCGTGCAACACACAGTAacccatttgtatttatttgttctTTGACCTTCTTTTATTGAATTGTAACATTTGTACTTAAAAATAAACCAAACATTTTGAACTGTGTTCCATTTGTATCCTGGAATGAACCCTTCACCTCATGCTATTCAAATGCCTGACATACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610259 lncRNA upstream 14216 68990838 ~ 68992839 (+) True G538878
TU610289 lncRNA upstream 45186 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 45601 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 90755 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 93019 68913773 ~ 68914036 (+) True G538867
TU610315 lncRNA downstream 435 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 24207 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 25656 69044070 ~ 69144935 (+) True G538891
TU610370 lncRNA downstream 197153 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 222879 69241293 ~ 69274586 (+) False G538991
XM_036980841.1 mRNA upstream 18916 68978897 ~ 68988139 (+) True LOC110526456
XM_036980843.1 mRNA upstream 30045 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 30045 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 51670 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 60181 68938642 ~ 68946874 (+) True LOC110526454
XM_036980844.1 mRNA downstream 12468 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA downstream 12468 69030882 ~ 69133616 (+) True LOC110526458
XM_036980847.1 mRNA downstream 129916 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 129917 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA downstream 129918 69148332 ~ 69189966 (+) True LOC110526459
TU610258 other upstream 4227 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 100208 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 195165 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 302359 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 325403 68679377 ~ 68681652 (+) True LOC110526436
TU610498 other downstream 343227 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 997928 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1017780 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1463536 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1533381 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile