RNA id: XM_036980844.1


Basic Information

Item Value
RNA id XM_036980844.1
length 6694
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110526458
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69030882 ~ 69133616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTATTTCCTGAGGGGCTACATGATGTGGACCCCTCAGCTGTTTTGAGAGGGTTCATGGAATCatgttaatttttttatttattttgtaaccATTAACAATGTAGTATGGTAGTTGTAAGAGTATATTCGATTCATTAGTATATCAAAGAAGACAGGGGATCATGCATAATGTAAACGGGAACTGGTAAACCTACAGAATAAACCCTCCCAAGGCATTGGAAAGTTTCCTGATAATTGAGGCGCTCATGGGGAGTTTTGTACTGGTGTGCCTTCGTTCCTGGATGAGGCCAGACTAGTTGGTTAGTGCGAGGAGTGTGTTTTGCCTGTCATCGGTATTGCCTTGTCCCTATCTACAGAGACACTCGGGCTGTAACGGTGTCCGCTAGAAGGGCATTACGAGCCTGGCCGTAACGTTAGCTGAAACTTGACGCCGTCGATCCCGGTTGTTGTTCTGTGGAGTGGGTTTATTTGAAATTATATTCCGATTACGGTCCAATTCGGAACGATCAGAGAAACAGAAGGCTGGGATTAGACACAGGGGAGAAATTGGGTGAAAGAGCGCGTAGCGCCGCAGAATCGCAGTAGGCTACATTGCATCAAGTAGTTGTAGCTGATAACGCGATACAGTGTTACTTTACTGAAATACCAGCGGGAGACGATTCAGGAATTTATTGTATTCGAAGTTTTAAGCCAAACCGTTTGCAGTTTTCAAGGACATTTGTGGGAGGCTTGGGGAAGGTGCgcacctctgtctgtgtgtgctgccTCCGCATCAGATCGGACTGCAtcagaatcacaacaacaacaacaatagtcTGAAACTCAAAGGTGATCCCGGTGCAGTGACTGTCCTGTGTCGTCTCTCTGCGCCCCTGTATGTCCCCTGGCCTATCATAAAGACGCTGAGCTCAGGGACTTCGCTGTTGTAGGACCCTATGGCTCTGGGCCTTCCATCCTCCTCCATGGGCCTTTGGTCACGGCTGGCTGAACGGCTGCTGCTGGGACCATTGCTGGTCCTGCTGGTGTCTGGACTGGGCATGGCCCTTGGTCAGAGGGTTTACACCAACACATGGGCCGTCCACATCGCTGGAGGACCAGACGAGGCTGACCGCATTGCCAGTAAACATGGCTTCGTCAACCATGGCAATGTATTTGGTGACCTCTATCACTTCCGGCACCGTTCTGTGGAGAAGAGGTCTCTGTCGGATCACCGAGGGACGCACGTCCGTCTACAAAAAGAGCCTCAGgtGATGTGGGCAGAACAGCAGGTGGTGAAGAGTAGGAAGAAGAGGGACATCTACACGGAGCCCTCGGACCCCAAGTTTACCCAGCAGTGGTACCTGTACAATACTAATCATCGTGACCTGAATGCCAAAGGTGCATGGGAGCTGGGCTACACTGGGAAGGGAGTGGTGGTGTCCATCCTGGACGATGGTATAGAGAAGAACCACCCAGACCTTATATCAAACTATGACCCAGACGCCAGCTATGATGTGAACGATGGAGATCCAGACCCTCAGCCACGATACACACAACTCAACGACAACCGgcATGGGACTCGTTGTGCAGGCGAGGTGGCAGCGATGGCCAACAATGGAATCTGTGGAGTCGGAGTGGCCTACAACGCCAAGATTGGAGgagtgcgTATGCTGGACGGCGAGGTGACAGACGTGGTGGAGGCCCAGTCTCTCAGTCTGAACCCACAGCACATCCACATCTACAGTGCCAGCTGGGGCCCCGAGGATGATGGGAAGACGGTGGATGGGCCCGCCAAGCTCGCCAAGGAGGCCTTTCTACGCGGAGTgaccgagggTCGTGGGGGCCTGGGCTCCATCTTTGTGTGGGCGTCAGGGAACGGCGGGCGTGAGAAGGACAGCTGTAACTGTGACGGCTACACCAACAGCATCTACACCCTGTCCATCAGCAGCTCCACCCAGAACGGCAACGTGCCCTGGTACAGTGAGGCCTGCTCCTCCACCCTTGCCACAACCTACAGCTCTGGCAACCTCAACGAGAAACAGATAGTGACAACGGACCTCAGACAGAAGTGTACTGACACCCACACAGGCACATCCGCCTCGGCTCCTCTGGCTGCTGGGATCATCGCCCTTGCACTGGAAGCCAAtaaaaaCCTGACATGGAGGGACATGCAGCACTTGGTCGTGAGGACCTCTCATCCCGCCCACCTCCTCACCAACGACTGGAATACCAATGGGGTCGGCCGAAAAGtgAGCCATTCATATGGGTATGGTCTGCTTGATGCCAGTGCGATTGTGGCTCTGGCTGAGAACTGGACCAACGCTGGGCCCCAGAAAAAATGTGTGCTGTCCATGGTAGCAGAGCCCAGGAACATTGGGAGCCACCTGCTGATCACCAAGACAGTGGACGGCTGTGTTGGGACAGCCAACCATGTGAGCTCCCTAGAACATGCCCAGGCCCAGCTCACTCTCTCCTACAACCGCAGGGGCAACCTGGGCATCTACCTGACCAGCCCACAGGGTACCCGCTCCACACTGCTCGctcccaggcCTCATGACTACTCGTCAGAGGGCTTTAATGACTGGGCTTTCATGACCACACACTCCTGGGACGAGGACCCTCGGGGGGAGTGGACCCTGGAGATGGTAAACGTGGCAGGGGCCAGCGACTATGGCACTCTGACCCAGTTCACCCTGGTGCTGTATGGTACAGGCTCAGACTCTCCCAGCTCCACAGCCAAGGACCTCTCTCAGCCCAGTAACTGTAAGACTTTTGACCTACAGCAGATCTGCATTGAGTGCAATGGTGGCTACTACCTCTTCCAGCAGGGCTGTGTGAGGGACTGTCCAGCCGGCTACACCGCAGGCTCCCAGCTCCTCAATtacaccatggggaactctgtggATCCAGCCTTGGTCCCCTCCTGCCTGCCCTGCCAACCCCCCTGCCTGACCTGCAGCGGCCTCAGCCCCAGCGCCTGCCTCTCCTGCCCCCCTCACAGCCACCTGGACCCTGTGTCCAGCACCTGCCTGCACCTCAACCAGATCCAGAGGGAGTCCCCTGGCAACTTCATGGTGGGCCAGGGCAACAGCGGTCCCCGCCCAGAGCTCAGCTCCCGCCTGCCCGTCACCATCGCCGTGCTCAGCTGCATGATCATCATGGCCACCTTCGCTGGGGTGTTCGTTCTGCTGCAGCTGAGATCTGGAGTCCTGGCCAAACTGCCCTCACTGGAGGAGGCCGGCTCAGGCCTGAGGGGGGGCTTCGGCCTGGGGGGCAGCAGCAGAATGGTGTCGTACCGCGGTATCCCTACAGTGTGGGGCGACGAAGGGGTGAACTCTGACTCCGACAACGATGAGTTTGACGTACACAATGAGAAGACTGCCTTTATCAAAACACAAAGTGCTCTTTAACCCCCTCCTGTCTTTGTATTCCTGCTttctacagccccccccccccccccccccccaatcactCTGACTCGTCTAATTCTGGGCTCCCTGTCCTCATGTTCCCCTCCTCTGGTTTCTCTTTCCCTGTTTCACTCCTTCGTTCTTCCTCTCATCGGGTTTCATTCCCCAGGTTTAGTGTTTCACTCTGTAGTGGGTGACCTGATGGGAGACTGGAGTCACGTGGAACAGGGATGGCCTGGGCGTGCTCGGCGCTCGCTTCACACTCGGGTGCTTTTCTATTAAACTGTCTCTCTGTGCCCTTTCGCCCTCAATCACCATCAGACAGAGTGTTTTCTGAACACAGCCCATTTCCCGGACGTCTCCAGGGTTTCCCTGTCACAATAAACAAACCATTATTGTTTgcgctcttttttttctctccagttCCAGTGCAGTAGCCGGATGAGATTGTAAATTGGGGGTACACAgctgtgcgcgtgcgcgtgctgAGTAGACAGCGAGATCGGGGTAGGGTCAGGATCTGAGAAGCCACAGCTTGAGTCCTCATAGTCCCAGTGTTTTGGTGAATCAGACCCAGGCTCTCccagagatactgtgtgtgtccatgctgCAGTATGAGACTGTATCTCTCAGCTCTGGCTGGATACAAGGCTATGAGTCATGAGACTAGCAACACTCACTCTACCCCCAGCATGGAATTCAGGAGGCGTTCCGCTTATTccgagcgggggggggggggggtcgggtcGGACTGAGTGCTTGCTCGCTGCCAGATCCACAAAGATAGGTCAGCAGTTCACCCAGCTACGCCTCCACACTTTACTGGGCCTCAGAATTTAGACCAAAATAATACTGCCTCTATGATTTGAAACCCCATTCCCAAGAAAAAAGTACCTATGAATAATTACATTGGCTTTCCACTTAAGTCTTATAATTGCTCAGCTACTGAGGATGAAAGTGGTAGTGAGATGTATTGTGGATGGGGCTCAGTACTGTAGAAGTGACTTTTTTTAACACAAGGGTTCCTGTGGGCTTCTTTGAGCAGCTATACAGGTAGTGAGAGGAgtgtgtgatagagagaaggGTTTTACGCactgcagaggagagagagaataacaaagTCTGGCCATGATTACCAGACTGGGCACTTCACTCTCCCTACTCTGCTGCTCTTTTTAATGCTGTTCATCACACACACCCTACCTCGTTTCAGTAAGGTatatgtgtgtctgagtgtgtgccGGCCAAGTGTGTGAGCTGGTGTCCAGTTGAGCAAAAGGATGGAATGACCACATTAGGAATACTAAGGATGTGGTTGTGTTTGTAGGCTGAGTTATGATACTGGATGGCCTATGTAGTTTCCCTTTGCCTGTTCTTTAAAGATCTACCTATGTCAAAGAACTGAGGTTGGCTATAATAAGCAAACTTCTTTTAACATCTTTTATCTGTCATTGAGACTTATCACAGCTTCTCTCCACTCGCCCTCCAGTCGTCATCAGGGATGTTGATGCCAACTAGAGATAATCTGTTTCATATACTTGCCAATGAATTATATCCTGAACGACACTACAGCTCAGATGTGTTCCAAAGGAGTTTTTCTTCTCTACTCATACTGTATCTTTATTGAAAAACTTAAGTGAATTTTTGGCTGCATATCTTCTACAATCTGTACCTCATTAATTCATCCATTGGACAAATATTGGATCCATccatcttttttttcttctatttttaCGTTGAAGTTATTTTTCATTTCCAGCAGATAATAGGGGGCTTCACTGAGAGGGGCTGTCATAGTGACAACGTGCATAAAAGATTGATGCAGCTGCTCATCCTGTCCTCTCACTCAGATCACACAGCAACGGCAGAAGAGTATATGTGTTCCATAGCGATGATGAAGGATTATATAGGTCAAAGGTGGACACTTTTCAGAGAAGGATATTTCTTTTGAACTGTAGGAGTTTTCCTTACACTGATTTACACTTCTACAGTAATAATAAGACTGAAATGTCTTTATCTACAGTGCCAGGGCTGTAGGGCTGCagtctctcttcttttctctctctcctcccctactctgtCTTGGCacaatttaaatgtaatttaatatATCCTTATTTATGCCCTCTGAACATATAGTTTTTAGGATTGTtttttaaggggggggggggggggggggggtgattccTGTGCTTTAAATCTTATGTAATTAAAAACATTTCTGAGGAAGACAGTCTTCCATACACAGATTGGGGAGTTGCTATCCTCTGAGTCCAAAGTAATGACGGCCAACTTTGAGCAAAATATGTAATTACCACAACGCTGGAATAGTGTGCTGTTTAACCCTGGCTGATGTAAGGTGCTGTCGTTGATGATAATGAAGTAACTGATAAATCCTAAGAGATTTTTCTTCCTACCAGAATTATAGTTGAGCAATCATATAGCAATCATTTTAATGTCCCAACCCCCCCATTTACATTGTTTCCTCTAAATTGGTCACCTCTGAATGTGGAAATCTATATTGCATTATAACAGTATGTCTAAGGAAAAAGACAGCTGCTGGGAAGGAGGTTGCACCCCTTGCAGTGCAGCCTCAATACTACAGCTGACTGCAGCAGAGATTCTGGCATTACCAAAGACAGGGCAATTTAGATTTGTGTTCAGTTCAGTTCTGCTCCAGATTGCTGAGCCTGAGTTGGGGAGATGATGCAATCTGAGGTTTTCTATATGCATTGATTCATAAATCAGatgaatatgtatttttttttaaatctctttGTTATTCCTGCTTTTTAATGCAGAGAGACctttccctctccaccccctgcTTGGTGACAGTGGTGGAGCTGAGACATTCTGTATGATGAGATACAGCGTTGGATGTGGAGGGAGCAGATTGAGAATGTATCCCATCCTCATACACTAAAGAGCTgaatgagggtgtgtgtgtgtgtgtgtgtgtgttataactaCAGAAGAAACACACTCATGGGGGTTAAACAGAGCTCTGGACATACGGATCATCCAgctctgtccacctctccacacctctccttATCAAGTCTTTGGCCTGGGGCTACATATAGTACCTTACAGAAACAGTGACCTATGAATAATGTAAAAGAATGACTACCTTAGATGGGACATAACTCTAAAATAAGGCCTATTtttgtactatatatatatatatatatagtgcagtGTAATGTtcttgtaattaaaaaaaaaaattgctctTGTTAAATTTGTCCTTTTTATTTAATTGATAGATTCTACGAAAAATAAAGATCTATGCAAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610315 lncRNA upstream 11829 69018849 ~ 69019053 (+) True G538925
TU610259 lncRNA upstream 38043 68990838 ~ 68992839 (+) True G538878
TU610289 lncRNA upstream 69013 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 69428 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 114582 68916056 ~ 68916300 (+) True G538869
TU610370 lncRNA downstream 81951 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 107677 69241293 ~ 69274586 (+) False G538991
TU610399 lncRNA downstream 107677 69241293 ~ 69274586 (+) False G538991
TU610403 lncRNA downstream 107677 69241293 ~ 69274586 (+) False G538991
TU610404 lncRNA downstream 107677 69241293 ~ 69274586 (+) False G538991
XM_036981775.1 mRNA upstream 12468 69007055 ~ 69018414 (+) False LOC110526955
XM_036980841.1 mRNA upstream 42743 68978897 ~ 68988139 (+) True LOC110526456
XM_036980843.1 mRNA upstream 53872 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 53872 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 75497 68955265 ~ 68955385 (+) True LOC118965123
XM_036980847.1 mRNA downstream 14714 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 14715 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA downstream 14716 69148332 ~ 69189966 (+) True LOC110526459
NM_001124523.1 mRNA downstream 88549 69222165 ~ 69228485 (+) True rhcg
XR_005052224.1 mRNA downstream 146569 69280185 ~ 69293194 (+) False LOC118964925
TU610304 other upstream 18920 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 28054 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 124035 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 218992 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 326186 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 228025 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 882726 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 902578 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1348334 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1418179 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile