RNA id: XM_021607451.2


Basic Information

Item Value
RNA id XM_021607451.2
length 3418
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110526459
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69148330 ~ 69189966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTACAGCATTTTCAGAAAGTATAATTTTGGATCATGAATGTCACTCGGGCAAGTACTCTAGGCCAATCGCTGCTCAACTAATGTTGTGTTCCAATTTAGTCACCTGCTTACCGTAATTATTGTCCCCGTTAATCCACGCAGATAATGAGCTGTTATGTTTTTGAATCGTGCTGTACacatagacattaaaaccaggGCTGTACCAAGCCTTCCGTCCCGAAGAGGACGCAGTCACTAACCTCCCCAGTCAGTCCCGCTTTGATAGGACAGCGCTGGCTTCCTGCTTTTTATGTTTCTGATGCGAGTATGGTCGCCGTGCCAGACCAGTGATATCAATACTACCTCACTGTAACAGTTTCTGTCGGCACAATTAATGCCTCCTCGATAAGAATTGTCATAGCCTACATATTCTATAAATACTTGAAACGTCGGAGTGAACTGCTAGCAATAACCTGAGTTTGACTGGGTTCCCACTCCTCTGGGTGCAGATCTGATGGGGTTTGGGGAGGACCTGTGGTGTCCCCAGGCCCACGCGGCCCTGATGCGGCTGCAGGACTCGGAGCTGCGTCTGATGGAGGTGATGAAGAAGTGGATGAGCCAGCGGTCCAAGAGCGACCGGGAGTTCTCTGTTCAGCTGCACCAGATGGCTGCCATGGTTGAAAAACTGGAGGGGTCCCAGCCTGGGGGAGGACCGGACTACATCAGCCAGCTCAATCAGTCGTGGGGTGTGCTGGTGGCTCAGACGGAGAGTTTGAGTCGTGTGATGCGGCGGCAGTCTGAAGACCTGCAGGTTGGGCCTCTCAGCAAACTGACCCTGCTGATCAGAGACAAGCAGCAGCTCAGGAAAACCTACACAGAGCAGTGGAGCCAGCTCAGCCAGGAGCTCAGcaggGTGACCCAGACAGAGCTGGAGAGGCTGAAGGCCAGCTATAGACAGCTGGTGAGGGATGCAGGGCAGGCAAAGAGGAAGTACCAGGAGGCCAGTAAAGATAAAGAACGTGAGCGTGCGAGGGAGCGCTATGTGAAGGCTACTCTGAGGCTCCATGAGCTTCATAATGAGTATGTTCTGTCAGTCAGAGCAGCCCAGGTGTACCATCAGCACCACTACAACCAGGCCCAACCTGCCCTGCTCATGGCACTACAGAGCCTACAGCAGGAGATGGTACTcgtactGAAGGAGATCCTGCAGGAGTACTATGACATGTCCAGTATGCTCCAACATGAGGTCGTATCTGTCCACGAGGAGATGTCTGCTGCTTTGATGGCCATAGAGCCACACAGAGAGTACGAGAGCTTCATCCAACAGAACAGGTCTGTAGGGGAGGTTCCGGTGTGTGTGGAGTTTGACTCTGGTCTTCTGGAGAACACAGATCGACTAAAGACTGGAGAGCTGGAACTAAATGAGCTTACAGTGGAGGGGATCCAGCACAGGTTGACTGCAGTGGAAGAGGAACTGCTGTCTCTAGCTGGTAATGTGGTTTCCCAACAGGCCTCAGTCAACCAGCTGGAGTTGGAGCTAGAGGCAGAGGAAGAGTGCATCAAACGGGGTCAGAGgGTTTACCAGTTCAGTAAGAGGCATGCACTGGAGGAGAGCCGACAGCAGGTGATGCTGTCTCTGGGAGCTAGAACCAGGCTGGAGGCACAGAGGTTGCTGCTGAAGGGGAAGCTGGAATGGCTGGGATCCAGTGAACCCCCACCTGCCCTGGGGCTGGAAGAGGATcgtatctccctctcctctatcaccTCTAGTGAGAGGGACGGCCTCAGAAACCTCAGTGTGGACGGCATCATTAGCCACCTTAGTGGCCTGTTCAAACCCAAATACACGGTGCCCCCTGCCCTGTCCCCAGTCCCAGAGGTAGAGCGCCCCCTGGAGCAGCAGAACTGGTACCACGGAGTCATCCCCAGGCTGGAAGTCCAGGAGCTGCTGAGGTGTGATGGAGACTTCCTGGTCAGACAGAGTCAGGGCAAACAGGAGTATGTCCTCTCTGTCCACTGGGCTGGCTCTTGCAGGCACTTCCTTATCCAGAGCACAgacaataTGTACCGCCTGGATGGAGAGGGATTCCACACCGTTCCCATGCTGATGAACCACCTGGTCTCGTCACACCAACACGTCACCAAGAGATCTGACATTGTCCTGAAGAGACCTGTCCTAAAGgacaAGTGGGTTCTGGAACACGATGATGTCATCCTGGGGCAGAGCATTGGCCAGGGTAACTTTGGGGAGGTGTACAGTGGTCGTCTGCTTTCTGATAACACCCCTGTAGCTGTGAAAGCCTGCAGAGAGAACCTGGCCCCAGAACACAAGAACAGGTTccttatggaggccagGATCCTAAAGCAGTATGACCATCCTAACATAGTGAAGCTGATTGGTGTCTGCACACAGAAACAACCCATCTATATCATTATGGAGCTGGTACAAGGGGGAGACTTCCTGTCCTTCCTGCGCTGTGAAGGTCACAACCTGAAGTCAAATATGCTGGTGAAAATGGCAGAGAATGTGGCATCTGGCATGGAGTATTTGGAGAGCAAGAAATGCATCCACCGgGACCTGGCAGCCCGTAACTGTCTGGTGGGAGAACAGAGCAGGGTGAAGATCAGTGACTTTGGGATGTCTCGCGAGCAGCAGGACGGGGTCTACTCTGCCGCGGGGGGCCTCAAACAGATCCCTGTCAAATGGACGGCCCCCGAAGCCCTCAACTATGGGAGGTACACCACGGAGAGTGACGTGTGGAGTTTTGGAGTTCTCCTATGGGAGATATTCTCCAGGGGAGTCACCCCCTACACCAGCATGTCCAACCAGCAGACACGGGACGAGGTGGAGAAAGGATACCGGATGCTAGCCCCAAACTCCTGTCCTCCAGATGTGTATGCCATTATGTGTCGCTGCTGGCAGTACGACACCAGAAACCGGCCGTCCTTCAGCAAACTCAGGACCGAACTCAGTGCTTTATACCACAAAGTGTCCTTACTCAAGTGACTTGTTTGATTCTGTTTTACCTTTTTATATGGAGCAGATGTTGCCTTTATTTAATATACATTGACTGTAGGGAACCCGTTGCTATGTGATCTTGATTTTACCATATTTAAGTAGTGATAATGTGTCAGGCTGTGAGACCACAGGTAATGTAAGTACACATGACGTGTGTATTGAAAACAATGGTACcatattctacaaagtagaataTTCTATATCTGTTGAATGTTGCTATTGTTTACTGTATTACGTTACTGTAAATGTACAAATTGAATGTTTCTATTATATCAGCTTTAAAGAGTTGAAGGGATCTTTTTCTTTCTTGTCTTTtttaatatacactgaacaaaaatttgAACactatgtaaagtgttggtcccatttttcatgagctgaaataaaagatatcAGAATTTGTCCATATGCAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610273 lncRNA upstream 3396 69044070 ~ 69144935 (+) True G538891
TU610321 lncRNA upstream 104304 69042621 ~ 69044027 (+) True G538931
TU610315 lncRNA upstream 129278 69018849 ~ 69019053 (+) True G538925
TU610259 lncRNA upstream 155492 68990838 ~ 68992839 (+) True G538878
TU610289 lncRNA upstream 186462 68961665 ~ 68961869 (+) True G538907
TU610370 lncRNA downstream 25601 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 51327 69241293 ~ 69274586 (+) False G538991
TU610399 lncRNA downstream 51327 69241293 ~ 69274586 (+) False G538991
TU610403 lncRNA downstream 51327 69241293 ~ 69274586 (+) False G538991
TU610404 lncRNA downstream 51327 69241293 ~ 69274586 (+) False G538991
XM_036980844.1 mRNA upstream 14715 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA upstream 14715 69030882 ~ 69133616 (+) True LOC110526458
XM_036981775.1 mRNA upstream 129917 69007055 ~ 69018414 (+) False LOC110526955
XM_036980841.1 mRNA upstream 160192 68978897 ~ 68988139 (+) True LOC110526456
XM_036980842.1 mRNA upstream 171321 68965062 ~ 68977010 (+) True LOC110526457
NM_001124523.1 mRNA downstream 32199 69222165 ~ 69228485 (+) True rhcg
XR_005052224.1 mRNA downstream 90219 69280185 ~ 69293194 (+) False LOC118964925
trnar-acg-7 mRNA downstream 112366 69302332 ~ 69302404 (+) True trnar-acg-7
XM_036980851.1 mRNA downstream 197359 69387325 ~ 69413204 (+) False LOC110526466
XM_036980850.1 mRNA downstream 197359 69387325 ~ 69422563 (+) True LOC110526466
TU610304 other upstream 136369 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 145503 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 241484 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 336441 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 443635 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 171675 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 826376 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 846228 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1291984 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1361829 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile