RNA id: NM_001124523.1


Basic Information

Item Value
RNA id NM_001124523.1
length 2553
RNA type mRNA
GC content 0.46
exon number 11
gene id rhcg
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69222165 ~ 69228485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATCACTGTCTCAGTACTTACTCAGCCTCCACCATGGGGAATTTCATCCAGGGATGCAAAGACTACTTCTCTCAGCAAAAGAACACCAACATCCGTCTTACACTGCCGGTAGTCTGCTTCGTCTGGCAGATTGCCATGATCATCCTCTTCGGAGTCTTCATCCGCTACGACGAGGAGTCGGACACACACTGGGTAGAGACCAAGGCCCATGACAACATCACCAGCGACATAGAGAATGACTTCTACTTCAGATACCCCAGCTTCCAGGATGTCCATGTGATGATCTTTGTGGGTTTCGGGTTCCTCATGACTTTCTTGAAGAGGTACAGCTTCGGCGCAGTCGGCTTCAACTTCCTCATTGCTTCCTTCGGCCTGCAGTGGGCTCTGCTCATGCAAGGCTGGTTCCACTCTCTCGATCCCCAGACAGGAAAGATCTTCATCGGTGTTGAAAGTCTGATCAATGCTGACTTCTGTGTGGCGGGCTGTCTCATAGCCTACGGGGCAGTGCTGGGCAAAGTCAGCCCGGTCCAGCTGTTGGTTATGACCCTGTTTGGTGTCACTCTGTTCGCTGTGGAAGAGTACATCATTCTGAACTTACTTCATGCTAGGGATGCCGGTGGCTCCATGGTTATTCACACCTTTGGAGGTTATTATGGTCTGACCATCTCCTGGGTCCTTTACCGACCTAATTTACACCAGAGCAAGCGTATGCAGGGCTCTGTGTACCACTCCGATATCTTCGCCATGATCGGCACACTGTTCCTGTGGATGTTCTGGCCCAGTTTCAACTCGGCCATTACTGACCATGGAGACGGTCAGCACAGGGCAGTCATCAACACCTACCTGTGCCTGGCCTCCACTGTCCTCACCACAGTGGCCATCTCCAGCTTCTCCCAGAAGACTGGCAAGCTCGACATGGTGCATATCCAGAATTCCACCCTGGCGGGGGGTGTTGCCTTGGGGACAGCGGCTGAGTTTATGATCTCTCCCTACGGCGCTCTGATCGTGGGCTTCTTATGCGGCATCATCTCTACCATGGGCTACATCTTCATTTCTCCCTTCTTGGAGAAGACACTGAAGATTCAGGACACGTGTGGAATACACAACCTGCACGCCATGCCTGGGGTGATTGGCGGTATAGTTGGAGCCATCACTGCTGCAGCTGCCAGCGAGTCAGTCTACGGAAAGCAGGGGTTGATCAACACGTTTGACTTCACTGGAGACTTTAAGGACAGAACCGTGTTAACTCAGGGTGGATACCAGGCCGCTGGAATGTGTGTGTCCATCGTCTTTGGTGTTGCAGGCGGAGCTATAGTCGGTTCCATCCTGAAGTTACCCATCTGGGGAGATCCTGCTGATGAGAACTGTTTTGATGATGAGGTGTACTGGGAGCTccctgatgaagaggaggagcatCAGGAGAGCATCCCTCCCATTCTGGAGTACAACAACCACATGATCCACAAGCGGCAAGACCTATCTGAGTCCAACTTCTCTGTGGAACACTGTGAAAGCTAAATACAGAGGTGTGAGGACACCACCACCCAAACATGTCCTGCTGGACCATGGAATTACCACGGAAATCCAACAGACAACCGCACTCCCCCTAAATGAAGGCACCTATACAAGGCACATTAAAACATGCTTTCTTGCATCTTATGTTAAGGTCATTACCTAAATCTGAAGCCATTAGATACTGTACGTGCCTTCACCCCTCCCCCCACCAGCCACCACCCACTCCATTAGATCACATACACTTCCTATATGGATATCCACTGGCACGGAACACTGTGTCCTGAATTCTGGTAGAATGCTGATCTATTGCAAGGACCTCTAAGATCTGCACTTAATCCACATGATGTGTGTCTAACTATAACCTACCACACAAAATGGCCAATAGAGCTTTTCCTGAGCATTGGTATactgtgtaatatatatatatatatatataaaacaatcacACACTGTGAAATCTTTGATCAAAACCACTGAATTGAATGAGGATGAGGAAAGGATTTTTCAGGAAATTACTTTGACCAATCCTCATTCTGTGGCCTTGTGTGTTGTACATTTTCTTCCCATTTTCTTTTCAGAGAAAATTGTATTTTAATATAGCTGGTGCATATGTAAAGAGGACAGTAGTTTACTTTTAGTTCAAAGTGAATATTTTGTCTCTAGTGCTCTGGGGGAAAAAATGGTTTTGCTCTATTTTCACAATGCAGGAGTACCCTTTGAGTCCCCAATATGATCATTTTCTTTGTTTGGGATAAAGATTTAAAGTATTTAACCAAAGAGTTAGTGTTGAGGTGTAGAAGTACATTTAAACTTTACTTGAACGTTTTTGGTGACATGATGTATTTAAACAGCTTTTAAAGCTATGTACATGCCAACACATTTTCATCGCTATCGCTAATGATTCAATGTATCCCCTGCCTTCTGAGATGCCCTCTATGTCTTCCACCTCTTAATTACGTTTTTACTGTACTGTTAAAATCATGTTTATTTAAATGTTGCTACTCATATAACTTAATAAATAAAATGTGAGGTTAGA

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0016327 apicolateral plasma membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610370 lncRNA upstream 5618 69215567 ~ 69216547 (+) True G538977
TU610273 lncRNA upstream 77230 69044070 ~ 69144935 (+) True G538891
TU610321 lncRNA upstream 178138 69042621 ~ 69044027 (+) True G538931
TU610315 lncRNA upstream 203112 69018849 ~ 69019053 (+) True G538925
TU610259 lncRNA upstream 229326 68990838 ~ 68992839 (+) True G538878
TU610397 lncRNA downstream 12808 69241293 ~ 69274586 (+) False G538991
TU610399 lncRNA downstream 12808 69241293 ~ 69274586 (+) False G538991
TU610403 lncRNA downstream 12808 69241293 ~ 69274586 (+) False G538991
TU610404 lncRNA downstream 12808 69241293 ~ 69274586 (+) False G538991
TU610406 lncRNA downstream 12808 69241293 ~ 69274586 (+) False G538991
XM_036980847.1 mRNA upstream 32199 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA upstream 32199 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA upstream 32199 69148332 ~ 69189966 (+) True LOC110526459
XM_036980844.1 mRNA upstream 88549 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA upstream 88549 69030882 ~ 69133616 (+) True LOC110526458
XR_005052224.1 mRNA downstream 51700 69280185 ~ 69293194 (+) False LOC118964925
trnar-acg-7 mRNA downstream 73847 69302332 ~ 69302404 (+) True trnar-acg-7
XM_036980851.1 mRNA downstream 158840 69387325 ~ 69413204 (+) False LOC110526466
XM_036980850.1 mRNA downstream 158840 69387325 ~ 69422563 (+) True LOC110526466
XM_021607458.2 mRNA downstream 212884 69441369 ~ 69526649 (+) False LOC110526467
TU610304 other upstream 210203 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 219337 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 315318 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 410275 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 517469 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 133156 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 787857 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 807709 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1253465 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1323310 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile