RNA id: TU610391


Basic Information

Item Value
RNA id TU610391
length 2914
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC118964925
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69280185 ~ 69293194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCTCTTCATTAACGGCTGCAGTTGCATCATTGTTTCCTTTATTTGTCATCTCTGTAAAGCCAATGATTCAGTAACAGGCTATATTTTGGTGTTTTCTTCCTTACAAATATGTGGTCTTTAATAGTGATGGATGAAGTAGGCCGTATGTAAAGCCGTTTTATACATATTTGCGTTTATTTGTGGGTTTTCTATTGCAACATATGATCCTATCTCAAGGTCGTGATTTGCATCCGGTTTGTGTTGGACATCGGTTTCTAAATAGGCAGACAAGGTCCTACCTTCATACAAAGCTGAAGGCAGCAGAGTCAGAACCTGACGACTACAGGGAGCCAGCTCAGATCTGGGTCATGCTGCCACCAGCACAAACCAGAAACATACTGGAGCTTTTACACATCTTCATCTCCACCAAGGCTCCCATGGAGGCATAGAGAAACCTGAAGCCAAGAGGCACGGAGCTGCATCCTAGCACCTGTCATTCACACCCCGATTGGTTCATGTTCATGTTCtgttttcaacctctctctcatattctctcctctcatcatgcCTCTCTATATCTGCCATTAGCTGTTACTCTACCATATAATATGCACATGTACTGTATACCTTACTTACCATTTAgtagacagtttgtgctgttcatACTGCAGAGTTTGTGGGTGTATCTCAGGCAGCCACTGCAGTGACAAGGGCACTGGATCAACCTTTGACAATAACAAAGACATTTACAAATACAATCTAATGCAATAgttcaaaaaaaataaaactaaaCGTATCCATTAAAACAATATGCTTGAATTCTCATCACTAACATTCAGCAACAATTAATTTGATCATTGTCGGGTAATAGAATAGTCATGCCAAGGGTTCTTCTACAACAGGCAAAGGACACGTTTATATGGATTAGGCCTAGAGAAGAATAGAGTGGTGAGATAGGTGTGGTTGAATTAGATAATGTCTCCATTCTTCTTTGTTGGGACTTGTATGGATCAGAGCCTGCATTACAGTTATTGATGAGGAGATTCAGATAGGCAGGTTGGAGGAGGTCGACACAAGGCTTTTGTTTTGAGGATAGTAGAGGTACAATCAGAATGCAGTTAGTGAATAAAGGTGAAGtaacaataaataataatagaTGGATATTTTAAGCATAAATTGAGATTGATCAGAATACGAAATGTTCAAATCAAGTGAGTTAATAGTAGTAGTCAACAACTAGCCTACTCTCAGTATTAAAAGACCTGAGGAGGATATCGGCCTACACTTGGATAATGTAAAGCTCACAATAGACATCAAGAGGACGCAGTTTTGGTTAAGGACGATATTATCAGAGTAGCGACTGGTAGGCCCTATGTCACTGGGTTGACCAGTGGAAATTCTAAATTGTCTGGTGACACACTAGAATGGAGAGATCCGGCCAGTCGTGGGAAAAGCTCGCTCGGACGTTTCACAAATCCAGCGTATAGCCAGCCTCCTTTACTGAATCAAACCAATTAGCCAGGAGCGCGCTCCAGCCATTGAGCGCCACTGTAGGTTCTGAGAGGAGTTGTTGGTTGAATGAAAATGCATCCCCGGATTTGGTTCTCCAAGAGAAGCTATAGAAGTTGCCTTTTGAGGGATAGCTATAGCACCGTGAAGGGCCAGGCAGAAAGTCCAAATTGAGACACTTGAATAATTTGTGCCGATTAGGTGTGCGCACAATGCGTAAAGGTATTGTGAGACTCACATGGGAGGTATAATGCATTTAAATCTAGAAAAACCATGAATATCTTAAGTGTTCTTCCTTTCTAGACAACACAACTCTATGTGAGAACACAACTGAAAGTATGCGTTTATGTAATGACATGGATCGCTTGACTTAATATCGACTGAAATATCGACTGACATAGCTCATCTTAATCAGGACCGTCTTTTTTATAGGCGTTGGCCTATAGTATGCCTAAATACGTCATAAAGGCTAATATCGGCCATATTCTGGGAAATCAAAACGTTTCCACCTGAGACAAGAATGATATCAATATGAGTCACAAATCTTAATCCATCTGATTAAACCTTAATTCAATATGTGTTTGCGTGTGCGTAAACCTGATTTATGCAGTGAGAACTATAAGGAATACTGGTCAACTACGGATACTTTGATGCGACAAAGCTTTATTCATATTCATGCCCGAATATCAATTGTTACAGTTCACTCATATGACTGGATAAAGTTATCTATTCCTCTGACCGGAATAAAGGCTTTTTATTAAGTATTTTTCCTTTTAGAATATGTTTTCGGCAAAATCACTCTAGATGCCTTGCGTGATGgaataaataaatgtataaagAGTATTCTTGCTCTAAGCATACTAAACAAAAGTGGGACAAATATACACTTCAATTCACAACATGATTTTGAATCCATTGTGGAAAATGTTGATTTATCATTTAAAGGCATGCTATAAAGATTACCCTACTTATATTTAGAGAATATATTCTCTAAATGAAATAAGAAAAAGCATTCATTTCGGGTTGTATCAGGTTTTGAGGAATTCAGAAGTGTTTCAACAGATGTTTATAATAAATGATTAGGGAAAATTGTTATAACTTACCGGAAAGGCAATGAGGTATTGGCCTGTAATTGCATATCAATTATGTTATTTTGTGTCTTTACTCCTAGACACCATTTATTCCTGTCCGAGTCGCAGGTTTGGAGGACATTCCTACATTCGGTTAGCTAGCTTTATGACGGCCGAGTAACACTCATACAGCTAGATAACCAAAGATAGCAACCGACTCCTCCTCGTACATACTGCCAGAGTATCGTATGGGTTCCACCTAAcatgaaaaataaacattttgttaatgCAATAACTAGCCTAATATTGATATTGCTACTACCAATTTGTATCCATAAATCTGCCCCCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610412 lncRNA upstream 6008 69273004 ~ 69275222 (+) True G538991
TU610398 lncRNA upstream 6644 69273004 ~ 69274586 (+) False G538991
TU610415 lncRNA downstream 20669 69307979 ~ 69309980 (+) True G538993
TU610535 lncRNA downstream 121438 69408748 ~ 69427787 (+) True G539105
TU610570 lncRNA downstream 182674 69469984 ~ 69471242 (+) True G539138
TU610571 lncRNA downstream 187038 69474348 ~ 69477339 (+) True G539139
TU610619 lncRNA downstream 260075 69547385 ~ 69550720 (+) True mvda
NM_001124523.1 mRNA upstream 52745 69222165 ~ 69228485 (+) True rhcg
XM_036980847.1 mRNA upstream 91264 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA upstream 91264 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA upstream 91264 69148332 ~ 69189966 (+) True LOC110526459
XM_036980845.1 mRNA upstream 147614 69030882 ~ 69133616 (+) True LOC110526458
trnar-acg-7 mRNA downstream 15022 69302332 ~ 69302404 (+) True trnar-acg-7
XM_036980851.1 mRNA downstream 100015 69387325 ~ 69413204 (+) False LOC110526466
XM_036980850.1 mRNA downstream 100015 69387325 ~ 69422563 (+) True LOC110526466
XM_021607458.2 mRNA downstream 154059 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA downstream 154711 69442021 ~ 69526649 (+) True LOC110526467
TU610304 other upstream 269268 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 278402 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 374383 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 469340 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 576534 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 74331 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 729032 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 748884 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1194640 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1264485 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile