RNA id: XM_036980851.1


Basic Information

Item Value
RNA id XM_036980851.1
length 1921
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110526466
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69387325 ~ 69422563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaaagagagggagagaagaggaggggaaaagagggagccACTTGTCCACGAGGAGTTTAGAGTACTTGGCACGATTTACCTCAGTAGCAATGGGGTCTCTAACTGGTCCCTCGTGTCTGCTTCTGTTTTTCATGGTGACCCTCCAGACCCTGAACAGCACCCAAGCGAATAGGATAATCACGGAGAAACCGGGCCGCGCTGATTCATCTGAGAGCGGGCTTGGGTTGAAGGAGCATTTTCTGATTGTTACACAGCACAATAGGCTGCGCAGCTGGGTCACCCCCATGGCCGCTAACATGCAGAAAATGGACTGGAGTGAGAAGCTGTTCAAACTTGCCCAGGAGAGGGCAAAGTCCTGCCACACAAATCCCGCTCCTCAGGACCAACCGCTCCGCCACATTGGCTGGAACACCCATCATTCAGCTCATGTTACCAGCTCATTTGCTGAGGTCATTGACTCATGGTTCGAGGAAGGGCGGGATTACATGTACCTGAGTGGGCAATGCAgagagaatgctacctgccaaCACTACACACAGttGGTGTGGGCCACCTCCAGTAATGTGGGCTGTGCCAGACAGTTGTGTCTGAGGGGTGATGCTCTCTGGGAACTGTTTGTCTGTGCATACTCCCCTGGGGGTAACTGGGAGGTGAATGGGAGGTTGGTGGTGCCCTATGTGGCTggtttctcctgttctctctgcacCTCTTCCATGTCAGGCTGCTTCAGACTGTGGGACCATGTGGGAGGACTGTGTGAGACCCCCAGGAACCCATGTCGTATGAGCTGTGGGCAGCATGGTCGTCTGAACATCTCCTCCTGCCAGTGTCATTGTGGACCTAGGTTCACCGGACGATTCTGTCAGGtgcgcTGCAGTGTGAAGTGTGTGCACGGCCGCTACAAGGAAGAGGAGTGCTCCTGCAAGTGTGATGTTGGTTATGGGGGTGCTgagtgtgcagAGAAGCAGCAGTTTCCCTTCCACAGCTGTGACGTGAGGATAGATGGAGAGTGCTTCATGGTGTCTCCAGAGGTCGACACCTACTATGGAGCCAAGACCCGCTGTCAGgagcGAGGGGGGATTCTGGCCCAGATCCACAACCAGAAAGTTCAGGACATCCTCGCATTTTACCTCAGCCAGCTGGAGACCAGCAACGAGGTCACAGACCCTGACTTTGAGACACGCAACTTCTGGATCGGCCTGACATATAAACCTCTAAAGGACTCTTTCCGCTGGGACTCAGGAGAAATCCCCACATACAACAGCTTCGCCTTTGGACAGCCTGACAACCAGGGcttTGGGAACTGTGTGGAGCTGCAGGCTTCCAGCGCCTTCAACTGGAACGACCAGCGCTGTAAAACACGCAACCGATACATCTGCCAGTACGGTCCAGAGCACATAGCCCTGTGGGAAGTTGGCCGGTGATGAACTCGGCACTCGAGGGTGGAGAGCACAGCATTGGAGGGGTTGGGGAGGTGGGTCGTTTGGGCCGTTCGTTGGACCCGGTCTGGGTGTGTGTCAAGCAGAAGCTGGTCTTATTGGTCTTATTTCATCCAGTGTTTTTCACTCCAACCCTTGTTGCACATATCCCCTGTTGCTGGTCAGGACTGGGCCCGTCTATCCAGTGCAGGAAAAAAAGCACACAATGGGAGAACTTCCAAACCAACAGAGTTTGAGCTCAACTGTAGATGGTCCATGGCAGCACAAATCTGTTTTGTACTGTACTGTTTTTTGTATTGCATATTCTTTTTCAGACTTAGCTAAATTATGATTCATTTGTGATGTTTGCCATAACTGCCTCCCTTCATTGTCAGTTTGATTGTACAATTCTCCCCAATGCACTGAATGTACAGTACCATGACAACCACTATTTTTGCTTTCTCAATCATCCAGTAAGTGAATTAAAACGGTTTGCTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610415 lncRNA upstream 77345 69307979 ~ 69309980 (+) True G538993
TU610387 lncRNA upstream 99532 69281230 ~ 69287793 (+) False LOC118964925
TU610391 lncRNA upstream 100015 69281230 ~ 69287310 (+) True LOC118964925
TU610390 lncRNA upstream 100123 69280228 ~ 69287202 (+) False LOC118964925
TU610388 lncRNA upstream 100123 69281230 ~ 69287202 (+) False LOC118964925
TU610570 lncRNA downstream 56780 69469984 ~ 69471242 (+) True G539138
TU610571 lncRNA downstream 61144 69474348 ~ 69477339 (+) True G539139
TU610619 lncRNA downstream 134181 69547385 ~ 69550720 (+) True mvda
TU610655 lncRNA downstream 245294 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 273744 69686948 ~ 69687800 (+) True G539239
trnar-acg-7 mRNA upstream 84921 69302332 ~ 69302404 (+) True trnar-acg-7
XR_005052224.1 mRNA upstream 94131 69280185 ~ 69293194 (+) False LOC118964925
NM_001124523.1 mRNA upstream 158840 69222165 ~ 69228485 (+) True rhcg
XM_036980847.1 mRNA upstream 197359 69148330 ~ 69189966 (+) False LOC110526459
XM_021607458.2 mRNA downstream 28165 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA downstream 28817 69442021 ~ 69526649 (+) True LOC110526467
XM_021607462.2 mRNA downstream 117983 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA downstream 117997 69531201 ~ 69539723 (+) True pdcd5
XM_021607463.2 mRNA downstream 128689 69541893 ~ 69550751 (+) False mvda
TU610498 other upstream 19683 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 375363 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 384497 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 480478 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 575435 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 603138 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 622990 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1068746 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1138591 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1202321 70615525 ~ 70621474 (+) False cmc2

Expression Profile