RNA id: XM_036980850.1


Basic Information

Item Value
RNA id XM_036980850.1
length 1804
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110526466
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69387325 ~ 69422563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaaagagagggagagaagaggaggggaaaagagggagccACTTGTCCACGAGGAGTTTAGAGTACTTGGCACGATTTACCTCAGTAGCAATGGGGTCTCTAACTGGTCCCTCGTGTCTGCTTCTGTTTTTCATGGTGACCCTCCAGACCCTGAACAGCACCCAAGCGAATAGGATAATCACGGAGAAACCGGGCCGCGCTGATTCATCTGAGAGCGGGCTTGGGTTGAAGGAGCATTTTCTGATTGTTACACAGCACAATAGGCTGCGCAGCTGGGTCACCCCCATGGCCGCTAACATGCAGAAAATGGACTGGAGTGAGAAGCTGTTCAAACTTGCCCAGGAGAGGGCAAAGTCCTGCCACACAAATCCCGCTCCTCAGGACCAACCGCTCCGCCACATTGGCTGGAACACCCATCATTCAGCTCATGTTACCAGCTCATTTGCTGAGGTCATTGACTCATGGTTCGAGGAAGGGCGGGATTACATGTACCTGAGTGGGCAATGCAgagagaatgctacctgccaaCACTACACACAGttGGTGTGGGCCACCTCCAGTAATGTGGGCTGTGCCAGACAGTTGTGTCTGAGGGGTGATGCTCTCTGGGAACTGTTTGTCTGTGCATACTCCCCTGGGGGTAACTGGGAGGTGAATGGGAGGTTGGTGGTGCCCTATGTGGCTggtttctcctgttctctctgcacCTCTTCCATGTCAGGCTGCTTCAGACTGTGGGACCATGTGGGAGGACTGTGTGAGACCCCCAGGAACCCATGTCGTATGAGCTGTGGGCAGCATGGTCGTCTGAACATCTCCTCCTGCCAGTGTCATTGTGGACCTAGGTTCACCGGACGATTCTGTCAGGtgcgcTGCAGTGTGAAGTGTGTGCACGGCCGCTACAAGGAAGAGGAGTGCTCCTGCAAGTGTGATGTTGGTTATGGGGGTGCTgagtgtgcagAGAAGCAGCAGTTTCCCTTCCACAGCTGTGACGTGAGGATAGATGGAGAGTGCTTCATGGTGTCTCCAGAGGTCGACACCTACTATGGAGCCAAGACCCGCTGTCAGgagcGAGGGGGGATTCTGGCCCAGATCCACAACCAGAAAGTTCAGGACATCCTCGCATTTTACCTCAGCCAGCTGGAGACCAGCAACGAGGTCACAGACCCTGACTTTGAGACACGCAACTTCTGGATCGGCCTGACATATAAACCTCTAAAGGACTCTTTCCGCTGGGACTCAGGAGAAATCCCCACATACAACAGCTTCGCCTTTGGACAGCCTGACAACCAGGGcttTGGGAACTGTGTGGAGCTGCAGGCTTCCAGCGCCTTCAACTGGAACGACCAGCGCTGTAAAACACGCAACCGATACATCTGCCAGTACGGTTTCATCTCAAAATGGCGTCCCCCGTCCTCAGAATCTACAACAGCTAACCTGGATGGGACCTCTAACCACACTCTTTATAAGAGGGTCGTGTTCAGCTCACTTGCACTGGAGTGGGACATGGGAAATAGAGTCGATTGGTTTGCTTTAGATGCATTAGTTCCACCTGATGATATTAAGCCATGATAGACAGACTAGGCTCGTTGCAACTCATAATTCTCCTAAGCAAAGTATAAAATCTATTTATTTTAATGAGCATCTATCATGACTTTTTGTTTTTCCAACGTTTAGTCCCAGTGTCTTTATGGACATTGAGAACATTTCAGAATGTCCATGAGCCTCTACTGTGAAGATAATGGATTTGATCTGCTGTTTACCTCATCCCAATAAAGTCTTCCTTTGCATTTGATTTTTCAA

Function

GO: NA

KEGG:

id description
K22682 CLEC18; c-type lectin domain family 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610415 lncRNA upstream 77345 69307979 ~ 69309980 (+) True G538993
TU610387 lncRNA upstream 99532 69281230 ~ 69287793 (+) False LOC118964925
TU610391 lncRNA upstream 100015 69281230 ~ 69287310 (+) True LOC118964925
TU610388 lncRNA upstream 100123 69281230 ~ 69287202 (+) False LOC118964925
TU610384 lncRNA upstream 102053 69281230 ~ 69285272 (+) False LOC118964925
TU610570 lncRNA downstream 47421 69469984 ~ 69471242 (+) True G539138
TU610571 lncRNA downstream 51785 69474348 ~ 69477339 (+) True G539139
TU610619 lncRNA downstream 124822 69547385 ~ 69550720 (+) True mvda
TU610655 lncRNA downstream 235935 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 264385 69686948 ~ 69687800 (+) True G539239
trnar-acg-7 mRNA upstream 84921 69302332 ~ 69302404 (+) True trnar-acg-7
XR_005052224.1 mRNA upstream 94131 69280185 ~ 69293194 (+) False LOC118964925
NM_001124523.1 mRNA upstream 158840 69222165 ~ 69228485 (+) True rhcg
XM_021607451.2 mRNA upstream 197359 69148331 ~ 69189966 (+) False LOC110526459
XM_021607458.2 mRNA downstream 18806 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA downstream 19458 69442021 ~ 69526649 (+) True LOC110526467
XM_021607462.2 mRNA downstream 108624 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA downstream 108638 69531201 ~ 69539723 (+) True pdcd5
XM_021607463.2 mRNA downstream 119330 69541893 ~ 69550751 (+) False mvda
TU610498 other upstream 19683 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 375363 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 384497 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 480478 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 575435 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 593779 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 613631 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1059387 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1129232 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1192962 70615525 ~ 70621474 (+) False cmc2

Expression Profile