RNA id: XM_021607458.2


Basic Information

Item Value
RNA id XM_021607458.2
length 1834
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110526467
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69441369 ~ 69526649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGTGCTGCTCTAACTGCTCTGTCATTGATTCAGTAGTAACACAGTCGTCAGTccacagcctgcctgcctgcagagagagagccaaagcaggaagaaagaaagagaggacataaggagagaggaaaatagagtgattgtgagagagagaagcagggaaagCGTCCAgccatctgtctgtctccagtctgAAAGCCACAGCCGCCCTCTTTGTTTGGCGTCCCTGATATGACCCTGTTTAAAAGTGAGCACCACCGCAGCCCACGATACATTAGCATGAGTGGAGAGCTGAAGTCCAGCCGTTCCAGGACCAGCAGCAAGAGACCCAGCAGCAATCCATACGGATCTGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGCGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGTACAGACGTAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGCGGATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACCCTGATAAAGACACAGATTGACGGGCTGCTCGACAACCTGGACAGGATGGACACACAGAGGCGGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGTTTGGCCGGGTCACCGTACCCCCCCTCCGCCAGCAGCGGTGACCGCTCCCCCTCCCCCCTATCCCCCCCACGCCACTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCACACGatgAATAACCACAGTTCTGACCCTGAAGATGAGCTGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTTGTCAAGAAGTTACCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCGAACCAACCAGTTACATTGTATTCTATATCCACATATACATCAacagcacacatacacagacacactgtaaTTACAGTTGATCAGAAATCAAGTATCTCCCTTGGATATTCACCACTGAGATCAGCTTAGATTACACACACATTTTATCTGCAGAGTGTAATTATTAACCAGAACAGGAAAGTGAAATAATTTCTATATTCATAATTTTCTTATGTTCTTTTTAGCCCGTCTTCGTATTTTCCAGAAAAACATTCTGATTACCAGTTCGTATAAATTTGACATGCATATTGAGAGACTGAGGGTATTTGAAATGAGCATACTATAGATGTCGCAATCATAGTTTTTCGGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTGCCAGAGCATGAGTCCATCAGTTGATACTTGTCCATCAGTAAATCCCCCCCCCCTTATGTCTGTGTAATGTTATCTCCCTGCTGTATTACTACCTGTCTGTATTAGGTATGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCGGCCCGGTCCATGCGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCAGCattttattttagtattttttatttgttcGTGTTTTTTAAAGCGAGAAGAAAACAACAATGATAATTGTTTATTATAATTCCAGTGGTGTTAGATGTTTTGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAACACCTCTGGGAGGAGTGTTTtttttagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610535 lncRNA upstream 13582 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 131389 69307979 ~ 69309980 (+) True G538993
TU610387 lncRNA upstream 153576 69281230 ~ 69287793 (+) False LOC118964925
TU610391 lncRNA upstream 154059 69281230 ~ 69287310 (+) True LOC118964925
TU610388 lncRNA upstream 154167 69281230 ~ 69287202 (+) False LOC118964925
TU610619 lncRNA downstream 20736 69547385 ~ 69550720 (+) True mvda
TU610655 lncRNA downstream 131849 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 160299 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 193287 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 218814 69745463 ~ 69745782 (+) True G539265
XM_036980850.1 mRNA upstream 18806 69387325 ~ 69422563 (+) True LOC110526466
XM_036980851.1 mRNA upstream 28165 69387325 ~ 69413204 (+) False LOC110526466
trnar-acg-7 mRNA upstream 138965 69302332 ~ 69302404 (+) True trnar-acg-7
XR_005052224.1 mRNA upstream 148175 69280185 ~ 69293194 (+) False LOC118964925
NM_001124523.1 mRNA upstream 212884 69222165 ~ 69228485 (+) True rhcg
XM_021607462.2 mRNA downstream 4538 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA downstream 4552 69531201 ~ 69539723 (+) True pdcd5
XM_021607463.2 mRNA downstream 15244 69541893 ~ 69550751 (+) False mvda
XM_021607464.2 mRNA downstream 25850 69552499 ~ 69583243 (+) True LOC110526470
NM_001195178.1 mRNA downstream 63396 69590045 ~ 69591263 (+) True mc1r
TU610498 other upstream 73727 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 429407 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 438541 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 534522 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 629479 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 489693 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 509545 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 955301 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1025146 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1088876 70615525 ~ 70621474 (+) False cmc2

Expression Profile