RNA id: XM_021607461.2


Basic Information

Item Value
RNA id XM_021607461.2
length 1629
RNA type mRNA
GC content 0.41
exon number 7
gene id pdcd5
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69531187 ~ 69539723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACATTGGATTATTCTGAGATCGATTACATTATACTGAAACAGGGCCCGGCCCCTAACGAAACAGTTCCACAAGACTCGTGAAGTGAGATTTTCTTATTTTACCATTGATAAAGCCTAATTTCTATCAATTCGAACACAATGGCAGACGACGAATTGGAGGCTATCAGGCGGCAACGCATGGCCGAACTGCAGTCAAAACATGGGAGTCTGTCTTGGAACCAAATGAATCCGGGGGACTCTTCAAATGACCAGCAAGGGCAGCAGGAGGCCAAACAGAGGGAAACAGAGATGAGGAACTCCATGCTGGCTCAGGTTCTAGACCAGTCCGCCCGCGCCAGATTGAGTAACTTGGCTCTGGTGAAGCCAGAGAAGGCCAAAGCAGTGGAGAATTACCTTATACAGATGGCCCGCATGGGCCAGCTGGGAGGAAAGATTTCAGAGACTGGTTTGATCGACATCCTAGAAAAAGTTAGTCAGCAAACAGAAAAAAAGACAACTGTCAAGTTCAACCGACGAAAGGTGATGGACTCagatgatgaggaggatgattGATGCGTTGAAAGGAGCCCAGGAGCCAGTTAGACGACTGACTTAGTGCGGGATTCAGGACATAGGTTGGAGCAGGGCTCTGTTCGTTGGCGGGCATCGTTGACTTGCCAAAGGCCCTGCGTTAGTGATGCACCCTGGGATACCACATCAGCCCCTGTGTGCATCTGGAACTCGTTACTATATTCTCGCTTATATAAATTTTCACCACGTTTTACTTTTTCTCCACCACAAGAAGCAGAACAAAATGCAACTTAGGGTATATTCCTGCTGCTGCATTTTTCGAGACTGCTTTGTGAATACTGTCTGTGTGCTGCTACTCAGCAATAGTGAAACCATCAAACTGGACAGAGCACATGGGTATAGTCATTGTTTTTTAATTCATTTTTGCTGACCTGTATCTTCAAcagttttacatttacatttaaaaaataaaaaagccttACATTTGAATGCTTATTCCACAAATAATCAACACAGTTTTATCATGATGATAGTTTGTCTTTGAGCTGAGTGCTTTAAGACTCATTGATTGGTCATATGGGGTTGCACTATATTTGCTTTCATTCAAAAAAATGCAAGTATAATCACATAAGAGCAATGTTGTAAGAAAAAAAGTCTcaaatatagtttttattaaaATGTAGTCGATATTCTTTACAAGGCCTCCTAGGTCGTGTATTAGGCTATACGTTGCATTACATTGAAATGTATAGGCTTGACATAGTTGGTTTGACTCACTAGGTTCAAAGGCTCTTTTCTGAAATGTATGCGATATGTGCTTTAAAAGGCTGAGATGTATTTGTAGCAGGATTTGTTAAATTATCTCAGTTGTTAGTCTACGACAGCACTTGAAGAACTTCCTGCTTCACTCTTATTGTACAGGTGTATGGTGAGACCACAGATATATGAATGGTTGCTTCTATTGTACACCTGCCACAGGTAATACTCAATATCTGACAGTACATTGATGTTCTTACAAGCAAGATGTAACTGAATATTTGGAGATAGGTTAATGGGAGATTTGGTTTCATGTTCAGTGTTCACTCCAATAAATCAATGCCAGCATTGATAAAGCAGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K06875 PDCD5, TFAR19; programmed cell death protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610571 lncRNA upstream 53862 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 59959 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 103414 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 221221 69307979 ~ 69309980 (+) True G538993
TU610391 lncRNA upstream 243891 69281230 ~ 69287310 (+) True LOC118964925
TU610619 lncRNA downstream 7662 69547385 ~ 69550720 (+) True mvda
TU610655 lncRNA downstream 118775 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 147225 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 180213 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 205740 69745463 ~ 69745782 (+) True G539265
XM_021607458.2 mRNA upstream 4552 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA upstream 4552 69442021 ~ 69526649 (+) True LOC110526467
XM_036980850.1 mRNA upstream 108638 69387325 ~ 69422563 (+) True LOC110526466
XM_036980851.1 mRNA upstream 117997 69387325 ~ 69413204 (+) False LOC110526466
trnar-acg-7 mRNA upstream 228797 69302332 ~ 69302404 (+) True trnar-acg-7
XM_021607463.2 mRNA downstream 2170 69541893 ~ 69550751 (+) False mvda
XM_021607464.2 mRNA downstream 12776 69552499 ~ 69583243 (+) True LOC110526470
NM_001195178.1 mRNA downstream 50322 69590045 ~ 69591263 (+) True mc1r
XM_021607465.2 mRNA downstream 59430 69599153 ~ 69604659 (+) True LOC110526471
XM_036980858.1 mRNA downstream 70839 69610562 ~ 69642119 (+) False LOC110526473
TU610498 other upstream 163559 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 519239 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 528373 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 624354 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 719311 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 476619 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 496471 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 942227 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1012072 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1075802 70615525 ~ 70621474 (+) False cmc2

Expression Profile