RNA id: XM_021607463.2



Basic Information


Item Value
RNA id XM_021607463.2
length 3468
RNA type mRNA
GC content 0.46
exon number 11
gene id mvda
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69541893 ~ 69550751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGCGACCGTGGTCTGATCGAAAGGATTGGCTGCCTCGTTTCAGTTACGGAACATGAGTGGCTCTAATTGGTGGGAGGTTTAGTCATGTGCGCTACCCCTCCAATCAACAGAAACGTTTTGTAAAGCGCTAAAGTTGTGCAGACATTACTTTATCAGTGGATCTCAAAATAGTAGACAGTCTCGCGTTTCTAGtaatttttgttattttattgatACGGGTTTTTACTTTTTATCAAAATGCCCGAGGACAGCGGCAAAGAGCTCACCATGGTAACATGCAGTGCGCCTGTGAATATTGCTGTTATCAAATACTGGGGGAAGAGGGATGAAGAGTTGATTCTACCCATAAATTCATCTTTGAGTGTCACATTACATCAAGACCAGCTCAAGACGACCACAACAGTGGCGTGCAGCAGGTTGTTCCAGGAGGATCGTATCTGGCTCAACGGCAAAGAGGAGGACATAACCCAGCCCAGACTACAGTCCTGCCTTAGGGAGATTCGCCGCCTGGCCCGTAAGCGACGTAGTGATGGGGAGGCTGATGTAGACACGGCCGGTTTGTCCCATAAAGTCCACATCTGCTCTGTCAACAACTTCCCAACTGCAGCCGGACTGGCCTCTTCTGCTGCCGGCTATGCCTGTCTGGTGTACACCCTGTCCCGGGTgatgggagtggagggggagttgTCTGTGGTTTCTAGGCAGGGTTCAGGCAGTGCCTGTAGGAGTATGCATGGGGGCTTCGTCCAGTGGATTATGGGCCAGCAAGGAGATGGCAAGGACAGTCTGGCCCAACAGGTGGAGCCAGAGACTCACTGGCCTGAGCTCAGGGTCCTTGTACTGGTGgTCAGTGCTGAGAGGAAACCAGTTGGCAGCACTTCTGGCATGCAAACTAGTGTAGAGACGAGCATTCTCCTgaagCACCGGGCAGACTCTGTGGTCCCAGCCAGGATGAAGGAGATGATTGAGGCTGTACATAAGAGGGACTTTACTGCATTCGCTGAACTGACCATGAAGGACAGCAATCAGTTCCATGCCACTTGCCTGGACACCTACCCACCCATCTTCTACCTCAACGACGTGTCGCGCTGTGTTATCAACCTTGTGCACCGCTATAACCGTCACTACAGGGAAACAAAGGTGGCATACACATTTGATGCAGGTCCCAATGCAGTGATCTACACTCTACAGCAGAATGTGGAAGAGTTTGTCCAGGTGGTCAAACACTTCTTCCCACCAGAGACCAATGGAGGACAGTTTCTAAAGGGTCTTCCGGTTGCCCCAACAACACTATCTGAGGAGCTGAAGCAGGCCATTGGTATGGAGCCCATGGTGAAGGGAATCTGCTATATAATCAGCactaagGCTGGACCTGGACCTCGCGTGGTGGAGGACCCTAGTGAGCATCTGCTTGGATCTGACGGGCTGCCCAAGGAGAGTGCATGATACAAGCCAGCCTCCCAGCTGGGCAGAGACAGAACTCTTTGATGCAAAGAAAGACCAGACATATTAACAATCAACAATTCCAATTCAGTCAATTGGATACATACATAGCTGTAGTCataaaaggggcaatctgcagttgctatatcaatttttggacttataaatgtaTTATATGTAACCATTGAAGAAGATAACTGATAAATGCTgcatgagtttagttcaactgtcgtaccccatcagaactcaaaatataagcttgttttactacaATGTTTGTAAAccaagtaaatgtaaacaaacgtttaaaacatggttataactataattttgatatcatgcatggtcagtccttgcatccatagcaccGTCTAattttgagtggttacatttctcctgccccatccctcagctttttaccaaaacaaaggattgcccctttaactggAGCGAAACAACCACACACAGCTGAATACCTCTAACACTGTTGACTAGTGATTCATTCGGACACTTTTCCTATTGCGAGTTTGGattaaatgttttgtaatgtTAAAGATGTAGAGATGCCTTGTGAGAATGATCAGAAATGTTTTAGTACTTTGATAACTGTGAACTCTGTTGATTTGATTCAAGTAGATTATGTAATTATGTACATGATTATGTCCATGTTATTAAAATATAATGGTTAACAGTCACCTTTAGAGTGAGTGAATCATAAGAATCTAATTGAAATTGTTAACCATTCAAAAGGATTATAAATTACAGTATTGAGAACGATGTCAGTGCTTTAGTATAAGAGCTGGATATATAGCCTTCATGTCATCTTCAGAGGTGGCACCACAGGCCCCAGAGTGGTGGGGGCATTTTTTTTTCTCCTGATGGTAACCAGGTAAAACTACAAAAACTCTACAACCTAGTTGTAGCAGGGACCTTAAGGGTTGCCCTATTGCCTGGGGCAAGTGAACTGAGCAGTCGGGCAAGTTGAGTCTGCTTTAAAGTTGCCCCAGCTAAAAATGTTTTACTGAAAACAAAACTGTAAGGAATTCCAATAGGCATAGCCTAAAACTGATCTTTCTGCTTCATCCCCCATTGTTTAAGTCAGGgtgtcacggcagatttcctctgaagaggtgtagcaaggatcggaccaaaatgcagcgtgGCGGCCATCCGAGGGGAGCAGTGGGAGCCCATCCTGCCCTGGAAGGAGAGTGCCCGTAAGCCGGTGGGAGAGAGCATCAAGCTCCCTCCCCAGAACCCTCCACCACGCCCACCCGCAGAGATGCGCAGGAAACGGGCAGAGGACCTGGAGGCGGCTGCCTATGTCAACCCCATCGCTGTCACTGCCAATGATGACTAGATCCGCTTACTGTTCCTCCTTCAGGCCTGTTGGGCTAAGCTCACTCAGGTTAGCTTATGGTTCCACTGAGCCCCAACCAAAACAGATCTACAGTGGAGCCCCACCCAGGCCATGCTCAGTCTCGACTGCCTTTGGCTGAGGGCCGAATCCTAAATTGAGATGGATAAGCTTGCATAACTTAGGTTTTATGTAAATTGGGAATTGGCGTCAATGGGAATTTTTTATGGACTGGTATCAAGTTAGGAATCAGGCCTCGGAGAGTAGAGGGTTGTGGAGAGGACACACTGCTGCTGATGTTTGATGATGTATAAGGGATTGTATTGAACTGAGATGTTGCTGCGCCTTAGTTACTGCAAAAGGGTTGTGTCCTATATCTCTGCACCACCTGCCACATCTCTTTCAGTTATAATTTTGGTCCCCAAAAGGCTTTGGAATGTAAATGGAAAAGTTTGTATTCTTGTTGCGACAGTAACTTATTTTGAGAGCAATTGAACAAATGGATATCTATTTCTCTTTTTGGTCGGTTTACTATGTCAGTGGTCAACTAGCTGTATTCTGGACAGTTGTGTATTCACCTCTCTACAAAATAATGTATGTCTATGTTTTATGCTTGTTATGCTTTTGATACAATCTGAaaataaacatacagtgccttgcgaaacta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610571 lncRNA upstream 64554 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 70651 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 114106 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 231913 69307979 ~ 69309980 (+) True G538993
TU610391 lncRNA upstream 254583 69281230 ~ 69287310 (+) True LOC118964925
TU610655 lncRNA downstream 107747 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 136197 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 169185 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 194712 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 207135 69757886 ~ 69758091 (+) True G539272
XM_021607462.2 mRNA upstream 2170 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA upstream 2170 69531201 ~ 69539723 (+) True pdcd5
XM_021607458.2 mRNA upstream 15244 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA upstream 15244 69442021 ~ 69526649 (+) True LOC110526467
XM_036980850.1 mRNA upstream 119330 69387325 ~ 69422563 (+) True LOC110526466
XM_021607464.2 mRNA downstream 1748 69552499 ~ 69583243 (+) True LOC110526470
NM_001195178.1 mRNA downstream 39294 69590045 ~ 69591263 (+) True mc1r
XM_021607465.2 mRNA downstream 48402 69599153 ~ 69604659 (+) True LOC110526471
XM_036980858.1 mRNA downstream 59811 69610562 ~ 69642119 (+) False LOC110526473
XM_021607467.2 mRNA downstream 59815 69610566 ~ 69642119 (+) False LOC110526473
TU610498 other upstream 174251 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 529931 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 539065 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 635046 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 730003 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 465591 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 485443 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 931199 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1001044 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1064774 70615525 ~ 70621474 (+) False cmc2

Expression Profile