RNA id: XM_021607464.2


Basic Information

Item Value
RNA id XM_021607464.2
length 3283
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110526470
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69552499 ~ 69583243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGTTGGCATGCACCAAGATTGTCTACATGGAGCACCCGTAGAATAAACTCTTTGGCATGCGTATTTTGCTCATGTTGTTCATGGCTGAAGCTGGGTCAAATCCCAGCTGAACCATAACCCATCTTCGTGACAACTCTGTCCCGGGAAGATGTCGAGCCGTGCTCTGAGGAGGTTGAAGGGGAAACAGCGGGGGCAGGAGGCCCTGGACCTCGGTGATCTTGTCCCAGGTGAAGGGCCAGAGCCAGAGGAGCAGGCTGCGGATGTTGAGGAAGAAGAATTGGAACCGGATGAAGCTGTTCTCCAGTCTGATAAGAGCAGCATCAGAAAAGCTAAGAAGAATAAGAAAAACTTGAGCAACATTTACGAACTGATATGTGAAGCAGAGAAAGCCACGACGGATGAAGACACAGTGAAGCCAGAAGAACAGCATGGTGATGAAACCAAGGAGAAGAGTGACAGCGGggaaacagagaagagagatgcaCAGCCTGAGACAGGTGCTgcgaagTCCGGAGATAAAACAAGCaagaaaaagaagaaaaagaagaagaaaaagaacaCTACAGGAGATAAACAGGAGGGAGCTGGGGATGACATTGACGCGTTGCTGGAGACCATAGAGCAGTCTAATGGACTGACCCTGCAGAGTGAGGGCTGTGGAGCCTCAGACAACAGGCCTGTGCTCTATGTGGAACACAGGAACCTGAATCCTGAGACGGAGTTGAAGAGATACTTTGGAGCTCGAGCAGTTCTTGGAGATCAAAGACCtcgtcagagacagagacagttccATCGCAGCACTTGGATGACCATCCCTAAAAACACCTGGCCACGCTTCAGTCGCCCAGGTATCTCAATGACCCTACTGGAGTCCAGGGATGGTCTACAGTACTTCACCTTCGAGCACAGCCGGGACTACCAGCAGATTCAGTTCAAATTCCTGGACTCAGTGGAGTCCATGGATCCCAACAACATTGTGGCCCTGCTACAGATGAACCCCTACCACATTGACTCCCTGCTGCAGCTCTCTGATGTCTGCCGCATACAGGAGGATCATGAAATGGCCAGGGACCTAATCGagcgtGCCCTGTACAGCTTTGAGTGTGCATTCCACCCTGTGTGCAGCCTGACGTCAGGAACCAGCAGACTGGACTACCTGCGACCAGAAAACAGGGcattctacttggctggttataAGCACATGATGTTCCTGGAGAGGAGGGGATGCCCCCGGACAGCCCTGGAGTACTGCAGACTCATCCTGAGTTTGGACCCCGACAGCGATCCCCTCTGTATGCTACTGCTCATTGACTTCCTCTCCCTGCGCTCACGAGAGTACAACTTCCTCCTCCGGCTATACCAGGATTGGGAGgtGCACAGAAACCTGTCCCAGTTGCCAAACTTTGCCTTCTCTGTGGCTCTGAGCCACTTCCACCTGAGTCAGGAGGATCAGACTGAGTCAGAGGAGAGGGAACGGCTCAAACACAAGGCTGACCTACTGCTGCAGGACGCTCTCATCATGTTCCCTGGAGTGTTGATGCCTCTGTTGGACCTGTGCACAGTGCAGCCAGACGCTGCTGTATCATCACATGACTTCTTTGGACCCAGAAGCCAGTTGGGGCAGACTCCTGCCCTGGCTGAACTGGTGTCTCTGTACGTGGGGCGGACGCACaccctgtggagggagggaggggtcctGCTGTGGCTGGAGGAGTGTGTGAGGGAGGTGTTACGACGAGTCGACTCTAAAGACCCTCTGGTGGAGGACTGCCAAAACAAGAGGAAGCAGAGGTACCAGAGTGCCCCTCTGAACATCCATCGCCACGTCATCCTGTCTGAAATCAAAGAGGCCACCTCCACTCTACCGCTGGAGGTGACCACTCAGTCGGTGATGGGGTTCGATCCTCTCCCCCCGCTGGACTCCGTGGTCTCATATACCCGGCCTGAGAGGCAGAGTGTGGGAGCCTCCAATGAGAGCACCCTGTCACTGTTCTTCCGCTCTCTGCTGCCAAACTTCAACCTGCAGGGTGAGCCGATGCCACAGGATGACCTGGAAGTAGCTCAGGCGGGTCGGGAGCTGAACCAGGAAGTAAATCGTCTGATGGTGGCCATGAGGGACATGCTGGCCAACATCCAGTTTCAGGAGCCACCTAGAGAGGACAACCCTGACAGAGACGAGGGGGAGTGGGACTGAGATgaggaggatacagagagaggtggagtgagacttGAGGGAGGGGTACATAGAGATGGGAATGGATAGAAGAAAGTAAAAGGTTGATTAAGATGAATGGAGATGGAGTACAGCAGGGTGGTAGGAGGATGAAGAGTGAGTGAGGGAATAGATTCAGTGAGAGTAGCAATGACAGATGTACTGTAACCTTAAAGAAAGAAATGGCAGGTCATCAATATGACCCAAACATCAAACCAACTCTCCCTTTCTGATAAAGGCGCAGTAGTATCACCTCTTCCTCATGTCAtagtcagtcagtccatcaaccctctctccttcctcatgtTGTCCCATTCTCTTTCCTCAGGACAGTTGTTCTTAATGATCTAGAAGATCAGGAGGCTGCGTTCATCAAGAAATAAACCCGTTCAGTTGTTCTTTAAATCTTTTTTAAAGTAACATTGCTTATCAAAAAAATGTATATTGTCTTTCATCAGAAGGATAATTATGCCCTACTGCTACAGTATATTTGAAGTGGAATCATTTATGATTGAATAAATCCCTATGGTGTTGTCTTAGCAACCCAACGTCGTACACGCATTGACAGTCTActgccatatgggttgatgagAGTCAGGTTAAAGGCTAATGAGTGTCTGATAAAAGTCAGAATTATACAGTAAGTCACCTTATAAGTGGAACAAATGGACTTAACTTCTTATTCCATTTTTAATATTGGCCATAACAACTTTCATTTTGAACTTCGACTCCCAATTAACCCTGTTCATTATTGCTAAGACAACAGCATTTTAAATTCTATCTGATTTTGAGGATTAAATTCAAACTGATCAGGATATTTTTCTGTTGTGATTCTCTATAAAGAGGTATTTTGACCTTACCTGAAATCAATTCTAGGCTGTTTCTTAACTAGGGCCCGAAGTTGGTCCCAATGAGGTCACGTTGGCAGGAAAAACTCCTGTCCCAAGTCATCTGTTAATATCAGGAAGGGATTGCATCCAACCCACTACTGTAAATACTCTGCTTAGAAATCATTTATTACACAAGCTAATGTAAAGACAATAAACTTGCTGTGCATATGGTTCAATA

Function

GO: NA

KEGG:

id description
K24970 TCF25, RQC1; transcription factor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610619 lncRNA upstream 1779 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 75160 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 81257 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 124712 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 242519 69307979 ~ 69309980 (+) True G538993
TU610655 lncRNA downstream 75255 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 103705 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 136693 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 162220 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 174643 69757886 ~ 69758091 (+) True G539272
XM_021607463.2 mRNA upstream 1748 69541893 ~ 69550751 (+) False mvda
XM_021607462.2 mRNA upstream 12776 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA upstream 12776 69531201 ~ 69539723 (+) True pdcd5
XM_021607458.2 mRNA upstream 25850 69441369 ~ 69526649 (+) False LOC110526467
XM_036980855.1 mRNA upstream 25850 69442021 ~ 69526649 (+) True LOC110526467
NM_001195178.1 mRNA downstream 6802 69590045 ~ 69591263 (+) True mc1r
XM_021607465.2 mRNA downstream 15910 69599153 ~ 69604659 (+) True LOC110526471
XM_036980858.1 mRNA downstream 27319 69610562 ~ 69642119 (+) False LOC110526473
XM_021607467.2 mRNA downstream 27323 69610566 ~ 69642119 (+) False LOC110526473
XM_021607470.2 mRNA downstream 27657 69610900 ~ 69642119 (+) False LOC110526473
TU610498 other upstream 184857 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 540537 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 549671 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 645652 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 740609 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 433099 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 452951 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 898707 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 968552 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1032282 70615525 ~ 70621474 (+) False cmc2

Expression Profile