Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001195178.1 |
| length | 1219 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 1 |
| gene id | mc1r |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 69590045 ~ 69591263 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004980 | melanocyte-stimulating hormone receptor activity | molecular_function |
| id | description |
|---|---|
| K04199 | MC1R; melanocortin 1 receptor |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU610619 | lncRNA | upstream | 39325 | 69547385 ~ 69550720 (+) | True | mvda |
| TU610571 | lncRNA | upstream | 112706 | 69474348 ~ 69477339 (+) | True | G539139 |
| TU610570 | lncRNA | upstream | 118803 | 69469984 ~ 69471242 (+) | True | G539138 |
| TU610535 | lncRNA | upstream | 162258 | 69408748 ~ 69427787 (+) | True | G539105 |
| TU610415 | lncRNA | upstream | 280065 | 69307979 ~ 69309980 (+) | True | G538993 |
| TU610655 | lncRNA | downstream | 67235 | 69658498 ~ 69660305 (+) | True | G539213 |
| TU610682 | lncRNA | downstream | 95685 | 69686948 ~ 69687800 (+) | True | G539239 |
| TU610704 | lncRNA | downstream | 128673 | 69719936 ~ 69720174 (+) | True | G539258 |
| TU610711 | lncRNA | downstream | 154200 | 69745463 ~ 69745782 (+) | True | G539265 |
| TU610718 | lncRNA | downstream | 166623 | 69757886 ~ 69758091 (+) | True | G539272 |
| XM_021607464.2 | mRNA | upstream | 6802 | 69552499 ~ 69583243 (+) | True | LOC110526470 |
| XM_021607463.2 | mRNA | upstream | 39294 | 69541893 ~ 69550751 (+) | False | mvda |
| XM_021607462.2 | mRNA | upstream | 50322 | 69531187 ~ 69539723 (+) | False | pdcd5 |
| XM_021607461.2 | mRNA | upstream | 50322 | 69531201 ~ 69539723 (+) | True | pdcd5 |
| XM_021607458.2 | mRNA | upstream | 63396 | 69441369 ~ 69526649 (+) | False | LOC110526467 |
| XM_021607465.2 | mRNA | downstream | 7890 | 69599153 ~ 69604659 (+) | True | LOC110526471 |
| XM_036980858.1 | mRNA | downstream | 19299 | 69610562 ~ 69642119 (+) | False | LOC110526473 |
| XM_021607467.2 | mRNA | downstream | 19303 | 69610566 ~ 69642119 (+) | False | LOC110526473 |
| XM_021607470.2 | mRNA | downstream | 19637 | 69610900 ~ 69642119 (+) | False | LOC110526473 |
| XM_036980862.1 | mRNA | downstream | 19637 | 69610900 ~ 69642119 (+) | False | LOC110526473 |
| TU610498 | other | upstream | 222403 | 69361641 ~ 69367642 (+) | True | G539068 |
| TU610304 | other | upstream | 578083 | 69011606 ~ 69011962 (+) | True | LOC110526955 |
| TU610258 | other | upstream | 587217 | 68996083 ~ 69002828 (+) | True | G538877 |
| TU610240 | other | upstream | 683198 | 68906045 ~ 68906847 (+) | True | G538859 |
| TU609930 | other | upstream | 778155 | 68811119 ~ 68811890 (+) | True | G538607 |
| TU611493 | other | downstream | 425079 | 70016342 ~ 70019477 (+) | True | G539959 |
| TU611507 | other | downstream | 444931 | 70036194 ~ 70039507 (+) | True | LOC110525047 |
| TU611739 | other | downstream | 890687 | 70481950 ~ 70484368 (+) | True | G540179 |
| TU611726 | other | downstream | 960532 | 70551795 ~ 70553920 (+) | True | LOC110526485 |
| TU611814 | other | downstream | 1024262 | 70615525 ~ 70621474 (+) | False | cmc2 |
