RNA id: XM_021607465.2


Basic Information

Item Value
RNA id XM_021607465.2
length 1827
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC110526471
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69599153 ~ 69604659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCGTTTCGCCACACAGCAGACCTGCGCAAGATAAAACCTCTACTCAGCACATACCAATCCCTTTGCTTCAGTGTGCGACTGGGATCAGCGCTCTCTCCGACTCGCCCACAACAGTCAACTCGCCCACAAGAAAACGAACATAACACACAGAGGACAGGATGAGGGAAATAGTTCACCTTCAAGCCGGCCAGTGTGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTGATCAGTGATGAACATGGCATCAGCCCTACAGGGAACTATGAGGGCGACTCCCCACTGCAGCTGGAGAGGATCAGTGTCTACTACAATGAGGCCTCGTCCTCTAAGTACGTCCCCAGGGCCATCCTAGTAGACCTGGAGCCAGGAACTATGGACAGTGTTCGCTCTGGGACCTACGGACAACTCTTCAGACCAGACAACTTCATCTTCGGTCAGAGTGGAGCTGGTAACAACTGGGCCAAGGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCAGTACTGGACGTAGTCAGGAAGGAATGTGAGAACTGTGACTGTCTCCAGGGCTTCCAGCTCACCCACTCCCTCGGAGGGGGCACAGGCTCTGGCATGGGGACCCTGCTCATCAGCAAGATCCGGGAAGAGTACCCTGACCGTATCATGAACACCTTCAGCGTGGTGCCCTCCCCTAAAGTATCAGACACAGTGGTGGAGCCCTACAATGCCACCCTGTCCATCCATCAGCTGCTGGAGAACACAGACGAAACCTACTGCATTGACAACGAGGCGCTTTATGACATCTGCTTCCGCACGCTCAAGCTCCCCACGCCCACCTACGGAGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGTGTTACTACCTCCTTCCGCTTCCCCGGCCAGCTCAATGCTGACCTCCGCAAACTGGCTGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCTGGCTTCGCCCCCCTCACGGCGCGTGGCAGTGCGTGCTACAATGCACTGTCTGTGCCTGAGCTCACCCAGCAGTTGTTTGACGCCAAGAACATGATGGCCGCTTGCGACCCGCGTCACGGACGCTACCTGACCGTAGCCATGGTGTTCCGTGGTCAGATGTCCATGAAGGAGGTGGACGAACAGATGTTGGCCATCCAGAGTAAGAACAGCAGCTACTTTGTTGAATGGATCCCCAACAACGTCAAAGTGGCCGTCTGTAACATCCCGCCCCGCGGTCTCAAGATGTCCGCCACCTTCATCGGGAACAACACGGCCATCCAGGAGCTATTCAAGCGCATCTCTGAGCAGTTCACCGCCATGTTTCGCCGCAAGGCGTTCCTGCACTGGTATACCGGAGAGGGCATGGACGAGATGGAGTTCACCGAGGCAGAGAGCAACATGAACGACCTGGTGTCAGAGTACCAGCAGTACCAGGACGCCACCAccgaggaggagggagagatgtatgaagaggatgaggaagagtcAGAGAGCCAGGCCCGGTGAACACCTTGGAAGAAGAGCCAAGCTTGTGGAAACCCAGCCGACAGCGCTTTGTCTATGTGTAGCAGGGTTGTTATCTGCCTCATGTACACTGTACTGTATAACCCGCCCTCCCTATACCCCTCCCTGCTCTCACTGTCTTTGCTAACTGTTAGCCCCAATTCTCTTAGCCCTCTGACCAACTCATGGCCTCCTGTTGATTTATCCTGTTGATAAAAACCTCCCAGACAGACCACTAAGTTGAATGGGTGAAATAAAGTGTCTCATAAACTGATGACGAATATCCCTTAATTTCTTATAATAAACATGTTCAAGCCTA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610619 lncRNA upstream 48433 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 121814 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 127911 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 171366 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 289173 69307979 ~ 69309980 (+) True G538993
TU610655 lncRNA downstream 53839 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 82289 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 115277 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 140804 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 153227 69757886 ~ 69758091 (+) True G539272
NM_001195178.1 mRNA upstream 7890 69590045 ~ 69591263 (+) True mc1r
XM_021607464.2 mRNA upstream 15910 69552499 ~ 69583243 (+) True LOC110526470
XM_021607463.2 mRNA upstream 48402 69541893 ~ 69550751 (+) False mvda
XM_021607462.2 mRNA upstream 59430 69531187 ~ 69539723 (+) False pdcd5
XM_021607461.2 mRNA upstream 59430 69531201 ~ 69539723 (+) True pdcd5
XM_036980858.1 mRNA downstream 5903 69610562 ~ 69642119 (+) False LOC110526473
XM_021607467.2 mRNA downstream 5907 69610566 ~ 69642119 (+) False LOC110526473
XM_021607470.2 mRNA downstream 6241 69610900 ~ 69642119 (+) False LOC110526473
XM_036980862.1 mRNA downstream 6241 69610900 ~ 69642119 (+) False LOC110526473
XM_036980861.1 mRNA downstream 7125 69611784 ~ 69642119 (+) False LOC110526473
TU610498 other upstream 231511 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 587191 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 596325 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 692306 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 787263 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 411683 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 431535 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 877291 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 947136 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 1010866 70615525 ~ 70621474 (+) False cmc2

Expression Profile