RNA id: XM_036980859.1


Basic Information

Item Value
RNA id XM_036980859.1
length 2687
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110526473
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69610562 ~ 69642119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaAATCTCCTCATATATTTTGTATGATCTGGCTTTCACCATTGGATTACCAAGACGTGTAAATAAGTCTACATTCTGAGCACGTTGACGTGTCTTCAGCTGATGTCTTGCCCTTATGACTGCTACAAGATGTAGCCGGTGAGATGGAATATCATGAGAGACCTGCTTCTTTTCGCCAAGCCCGCCTCAACCCCTTTGAtcggggtgaggaggagggcgGCCCCCCAGGGGGTAAAACCCCCTCTCGAGATGAGCTGAGACCTGAGCTCTTCTCCTCTAAGAGCAGAAACCAGAGTTTGGACCGAGCCATGGACCTGGGACTGGCAGAGGACCACTTCTCTCGACCTGTCGTCCCCGTGCAGGGCTCGTTTGTAGCGTCGGACATTGAGCAGCTGAAGATGGCCATAGAGGAGTGTAAGAGATTAATCCTGGAGCTGCCTGAGCATtcagagagacagaaggacacTGTGGTCAAACTCATCCACCTACGCCTCAAACTACAGGAGCTCAATGACCCTGAAGAGGATGAGCCAAACCTGAGGGTACTATTGGAGCATCGTTTCTCCAAGGAGAAGAGCAAGAGTGTGAAACAGACGTGTGATAAGTGCAGCACTATCATCTGGGGCCTCATCCAGACCTGGTACACCTGCACAGGATGTTACTACCGTTGCCATAGCAAGTGCTTGAACCTCATCAACAAGTCCTGCGTGAGGTCAAAGGTCAGCCACCAGTCAGAGTACGAGCTAAGCATCTGCCCAGAGATCGGGCTGGACCGGCAGGACTACCGCTGTGCTGAGTGCCGCATGCCTGTGTCACTAAggGGCGTGCCCAGCGAGGCCAGGCAGTGTGACTACACGGGCCAGTACTACTGCAGCACCTGCCACTGGAATGACACCGCTGTCATCCCTGCACGCGTCATCCACAACTGGGAGTTTGAGCCACGCAAGGTATGTCGTTCCTCCATGCGTTACCTGGCCCTGATGATACCCCGGCCTGTACTGAAACTGAGGGAGGTCAACCCACTGCTCTTCAACTTTGTGGAGGAACTAGTGGAGATCAGGAAGCTCCGTCAGGACATCCTACTGATGAAGCCCTACTTCATCACCTGTAAGGAGGCTATGGAGGCACGGCTGCTACTGCAGCTCCATGATCGCCAGCACTTTGTGGAGAACAATGACATGTACTCGCTGCAGGATTTGATTGACATCTCTAGTGGCAGACTCAGCTGCTCTCTCACAGAGATCCACACTACCTTTGCCAAGCACATCAAACTGGACTGTGACCGGTGCCAAGCCAAAGGCTTTGTTTGTGAGCTGTGTAAGGAGGGAGACATCCTGTTCCCGTTTGACAGCCACACCTCAGTGTGCCACGACTGCTCTGCTGTCTtccacagGGACTGTTTCTATGACAATTCCACAACTTGCCCGAAATGTGCCCGGATGACCGAACGCAAGCACGACGATCCGCCGGATCCGAAAGACAAGTAGCCCTGTCGATCTAAGCCTGTCACTGTGACGGACAACCTGTGGGAGTGGCCATGGCACTTTTTCTTATGTTGAGGACCATCAAGACATTTTTATGACACAAACATGACTAGctttccctcttgctctctctctctgttgttttgTGGGGATGTTAAGTTACTTTGTTCCAGTTCAGTGGACTATGGAAGATGGTAGCAGGATACTAGAGTTTGATATGATCCGGTAATGAAGTGTGATACTCTGAGACTGGCTGCACTGTATAGCCCACAGTAACGCATCCCTGAGCACTTAACCAATGTTGTAAAGTTTGTGTGTTACTGTGAGAGAGTACTGTATGGGCATCATGTTGCAGGCATGAATTGCAATGTGGGTCACATAATTGTCTTTACCTCTTAACAATCAAATATCTTTAACTACCTTGAAGTAGGTGTTAAATTCCAAATTAATCTTAACAAATCAATTTAACAAAACTACCATTCACCTCCAGGCCTTAACTGACATCGATAACGAGACAGGTATTTTAATGAGGTTAGGTCGTAGCTCTTCAAGACTTCCTCCCTATGGGCATGAGGTATTTCACCCCACTGTTGTGAAACAATGCGTTACATGATGGACAATGacactaaaatgttttttttattgtttatttgaaCACCACAGAATTATCTGCCTGAAACACTTAAGAGaacatgtggtatgtatgttATGTCTTAGGGAACTTTAATCTAGTACCTTTTTTACAGTAGAATTATTGGGCAGCCATGTAAACAATGTCAAGAGAGTAAAGTGAAGGAGAGCTCATTATGATGTGCTGATTAACTATATCTTAAGTTGACACACTGTATGCTGACATATTTGGAATTCCAATTGAACACTGTGTGCATTTACCCATTGATCAAGTGATCTATTTACAGTATTTTGTGAGGGGTTTTGCAGCCCGCATCAAGGTATGGCACATTATTTTCAGAGATGAGAAAGCTGACGAATGATACTTCTGGGGACATGAGCATGATGATGTTGACAAATTATTTGTTTTAAAATAATGAGTATTTGGCTGTGTTGTGTTTTTCTCTACATAATGATCTTCATAACATGCAAGTGTAATGTTCCATGTGTTAGTGAAAATCCAGATATTAACATGAACTGTAAGATCATGTGAAGTTGAGCATGAATAATGTATTAATAAATTCTATGTTGTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610619 lncRNA upstream 62011 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 135392 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 141489 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 184944 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 302751 69307979 ~ 69309980 (+) True G538993
TU610655 lncRNA downstream 16379 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 44829 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 77817 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 103344 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 115767 69757886 ~ 69758091 (+) True G539272
XM_021607465.2 mRNA upstream 8072 69599153 ~ 69604659 (+) True LOC110526471
NM_001195178.1 mRNA upstream 21468 69590045 ~ 69591263 (+) True mc1r
XM_021607464.2 mRNA upstream 29488 69552499 ~ 69583243 (+) True LOC110526470
XM_021607463.2 mRNA upstream 61980 69541893 ~ 69550751 (+) False mvda
XM_021607461.2 mRNA upstream 73008 69531201 ~ 69539723 (+) True pdcd5
XM_036980856.1 mRNA downstream 156 69642275 ~ 69654389 (+) False LOC110526472
XM_036980857.1 mRNA downstream 1322 69643441 ~ 69654389 (+) True LOC110526472
trnav-cac-7 mRNA downstream 57946 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607473.2 mRNA downstream 58168 69700287 ~ 69708734 (+) True gas8
XM_021607476.2 mRNA downstream 82379 69724498 ~ 69732656 (+) False LOC110526477
TU610498 other upstream 245089 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 600769 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 609903 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 705884 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 800841 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 374223 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 394075 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 839831 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 909676 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 973406 70615525 ~ 70621474 (+) False cmc2

Expression Profile