RNA id: XM_036980857.1


Basic Information

Item Value
RNA id XM_036980857.1
length 4377
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110526472
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69642275 ~ 69654389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAACTTGCAAAAGAACCATGTCATGCTATCACACAACATTGATTACAGATATGCAATATATTTAAAAATGCATGATTAAGCCTTGTTTGCCTATGCTTGATTAACTTTGTCATAAAGAGTTTATTGCACAAAGATCCCGTCCTTGCTTATGAAACATTTTTCCCCTCATTCACTTCATAACATGTAGAGTTGCTGCGTCCTGTGGGGAAGGGGGCGTCTCAGCTGCAGCAAATTGTGGGTCATGGCTAGAAGCGATCACTTCAGTTTTGATCAAATTAACGTCAGATTTGATTTTTCGTATCAGGTTAGGATAATTTactcagcagTGTTCTGCATTAAAACGAATCAATCCCATGGGATTAAATCAATGCACTTTCACATTGGCTCGATTGCTCAGTTCCAAACCCCCACGAGGATTTGAGAAGTTCTTCCCAAAGAGTGAGGACACTCCTGGAGTGAACAAGTCATCTGAAGAGACCGGAGATGAGAAGACCAAAGAGACAGAATCTCAGGGCGGAGGAGAAGAGGGACAAAATGaaagtggtgagagagagaggaggagaggcggaaggaaggatgaatcagactggtGGACACGCTTCCAGAATGATTTCCCCTGGGATGAGAAGACCACGCGCAATGTCGCGATCGGATTCGCCGGCATGGCCTCTGCGTTCCTGTATTTCTACTTCCGAGAGACTGGGAAGGAAGTCTCCTGGAAGGACTTTATAAATAACTACCTGGCTAGAGGACTGGTGGACCGTCTGGAGGTAGTCAACAAACAGTATGTCAGAGTCATCCCAGTGCATGGAGTCAACACATCAGAGGTGAGCTACCTGTGGTTCAACATCGGCAGCGTGGAGACGTTTGAACGCAACCTGGAGCTGGCCCAGCAGGAGATGGGCctggactctacacacagagTACCGGTGATCTATGGAAGCGAGAGCGACGGTACTTTCCTGATGAGCATTCTTCCAACCCTCTTGCTGGTTGGCTTCCTGCTCTTCACCATGCGCCAGGGACCAATGGCAGGAGGCCGTGGCGGGGGGCGGGGCAACCCCTTCAGCATGGGGGAATCCAAGGCCAAGGTCATGAAGGACAACATTGATGTGAGATTTAAGGATGTGGCGGGCTGTGAAGAGGCCAAGCTGGAGATCCTAGAGTTTGTCAACTTCCTGAAGAACCCCCGGCAGTACCAGGACCTGGGGGCCAAGATTCCCAAGGGTGCAGTGTTGTCGGGTCCCCCCGGCACAGGGAAGACCCTGCTAGCCAAGGCCACAGCCGGAGAGGCCAATGTCCCCTTCATCACCGTCAACGGCTCTGAGTTCCAGGAGATGTTTGTTGGCGTGGGTCCAGCCAGGGTGAGGGATATGTTTGCCATGGCCCGTAAGAACGCTCCCTGCATCCTGTTCATCGATGAGATAGATGCCGTGGGcaggaagagaggcagagggaacTTTGGGGGACAGAGTGAGCAGGAGAACACACTCAACCAGCTGCTAGTGGAGATGGATGGGTTCAACACCAGCACTAACGTGGTCGTCTTGGCTGGAACCAACCGaccagacatcctggacccagcaCTGATGAGACCTGGGCGCTTCGACAGACAGATTTACATAGgTCCACCAGACATAAAAGGCAGAGCATCCATCTTTCAGGTCCATCTGAGGCCTCTGAAGCTGGACTCCAGTATAGACTCTGAAGCTTTGGCCAGGAAACTAGCTGCCCTCACACCTGGCTTCACTGGAGCTGATATTGCCAACGTGTGTAATGAGGCGGCCCTGATAGCAGCACGCTACCTTAACGAGTCTATCATCGTCAAGCACTTTGAGCAGGCCATCGAGAGGGTCATCGGAGGTCTGGAGAAGAAGACCCAGGTACTACAGCCATTAGAGAAGACCACTGTAGCATACCACGAGGCTGGCCATGCTGTGGTGGGCTGGTACCTGGAACATGCTGACCCTCTGCTCAAGGTGTCAATCATCCCCCGGGGGAAGGGTTTGGGGTATGCTCAGTACCTCCCTAAGGAGCAGTACCTCTTCACGCGGGAGCAGCTGTTTGACAGGATGTGTATGATGCTGGGGGGACGTGTGGCAGAGCAGGTCTTTTTTGGGAAGATCACCACAGGGGCACAGGATGACCTCCGGAAGGTCACGCAGTCTGCCTACGCACAGGTGGTTCAGTTTGGGATGAGTGAGGTGGTGGGCCAGGTGTCTTTTGAGCTCCCCAGGCAGGGAGAGATGTTGATGGAGAAGCCTTACAGCGAGCCCACGGCCCAGCTCATAGACCAGGAGGTCCGCTCACTCATAGACGCTGCCTTCCAACGCACACACCAGCTCATCACTGAGAAGAGAGATGTGGTGGAGAAgGTGGGGAGGCGTCTCCTGGAGAAGGAGGTTCTGGACAGGGCTGATATGCTGGAGTTGCTGGGTCCTCGCCCCTACAAGGAGAAGTCTACGTATGAGGAGTTTGTGGAGGGGACGGGGCCCATGAAGGAGGACACCTCCCTTCCAGAGGGCCTCAAGAACTGGAACAAGGACCGGGGGACGGAAGAGCCTCCCCAGGAGCAGCAACGCAAGCAGGCTCTTTACCTGTAGACAGACACCACGTCTGACCTGGCCCCCACCCAACCAGGCCACTGGAGGAACATGTTGAGACTTAATTTGGTGAGGGGAGGGCACTTGACATGACCCAGACAGACTGATATCAAGAGAGGGTGTCAGGTTTAAGAAGGCACCCCTGCACCGTGTCCCTGATGGCTACAGATTGAGGGTTGTGGGGTGCAGCAGGGGATCTGCTCCAACAGCCTAGATTGTGCCAATTCTCATGTAGActttttttaaaatctgtttGGGAATGCAAAAAGGTGTTCCTGCATTTTGGTTTTGCAGGGCATGAGATTCATCAATCTGTGAAGGATATCCACTCCTCCACCATGCTGTTCATTTCCTTCCCTGGAGATTCCCTGCTGCACTATGTTCCTCCTTTGTCCTGACCACAGTGCATTCCAGGGCTGGTGTGGTCATTCTAAGGCCCTAGAGACCATGGTCGTCACAGGGAACATATATTGTTTTAATAGTTGTGTAGTATTCATTATTTTACCTTTTTCATTGTGTGTTGGATGAGTTTGTCTGACATGCAACATTTTTATGAATATATGATCATGTACATCAGGGATGGGTGACTGTCGGTGGCCATTTTGAAAGCCCTTGGATAAATCCCCCCCCAACTTACTGTTGTGAGTtaaaatacacaaggtgcaatttctacATTTGGTTGCACATCCGTTTTTCTGTTATGTTAGTCAATTAGcaattttattgatgtatttttaTGATATAGGAATGCAGATCTGTGAgcaactgcggcccctcatgatgagttcagttTTTTGTGGACCCCACCCCCATCAATACTACCCATCCCTGATGTACATCTCATTTGAAGTGAGATGTTTTCTTTTAGATTTCATATTGGAACATGAAGggctatgtgagtgtgtgtgttgcaccATTGTAATAATTTGGTTGGTGCTAATTTGTCCtctttcacacatgtacaagtgtatATTAATACCGTGTGTGATTTggacagccagggtctgccattatcaacggcGACCCTGGaggtaagtgccttgctcaagggcacattgacagatttggttttcaccttgttggctctGGGTTCTAGCAACCTTTAACTAGCAACCTTTTaagttactgtcccaacgctctatccgctaggctacctgccgagcTACGTATAATCCTCAACGTTTTTGCTACCTTCTGACCTTATTGAATTTCAGCGACGTGTTCATGTTCCCATGTCTCTCTTCAGTCATTGACACTTGTTAACTAAACAGCCATGTGATTGCAGAGGGTTTTCAGAAAGCTCAGCAGAAATCCAGTCCATGCAGAGCAGACTGTAACACTGGGACAGTATGACATTTACATTGTATTTTATCCTCTTTCTGGTTGAGGTTCAAACTGTTAGTAGGCCTAATTGAAGAAAAACACGTCTTCTGAATGTCACTTCAGTCTTTTGCAAAAAACAACCGCCACTCCTCTACCTGCCCACTTTTCCCCACAGGAAAACAGCTTCTGACAAGTTTTATTTCTGAGTACAACTAGTGTACACTACCTCACCTCTTATGCTCTCTGTGTTGCTATAAGTCAACTGACAACAGATGAACTTCACACGTCTTTTGTGAAGTATTGAGatacatacactactgttcaaacatttgggatcacttagaaatgtccttgtttttgaaagaaaataacatttttgtccatttaaattaacataaaattgatcagaaatacagtgtagacattgttaatgttgtaaattactatt

Function

GO: NA

KEGG:

id description
K08956 AFG3; AFG3 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610619 lncRNA upstream 92721 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 166102 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 172199 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 215654 69408748 ~ 69427787 (+) True G539105
TU610415 lncRNA upstream 333461 69307979 ~ 69309980 (+) True G538993
TU610655 lncRNA downstream 4109 69658498 ~ 69660305 (+) True G539213
TU610682 lncRNA downstream 32559 69686948 ~ 69687800 (+) True G539239
TU610704 lncRNA downstream 65547 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 91074 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 103497 69757886 ~ 69758091 (+) True G539272
XM_021607470.2 mRNA upstream 1322 69610900 ~ 69642119 (+) False LOC110526473
trnav-cac-7 mRNA downstream 45676 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607473.2 mRNA downstream 45898 69700287 ~ 69708734 (+) True gas8
XM_021607476.2 mRNA downstream 70109 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA downstream 70110 69724499 ~ 69732656 (+) True LOC110526477
XR_005052225.1 mRNA downstream 85230 69739619 ~ 69756833 (+) True LOC118964926
TU610498 other upstream 275799 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 631479 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 640613 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 736594 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 831551 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 361953 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 381805 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 827561 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 897406 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 961136 70615525 ~ 70621474 (+) False cmc2

Expression Profile