RNA id: XM_021607473.2


Basic Information

Item Value
RNA id XM_021607473.2
length 1815
RNA type mRNA
GC content 0.52
exon number 11
gene id gas8
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69700287 ~ 69708734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTCGCGAGATATTCATCAACGTTGCCATGACGACACGTTGTTGTAGTTCGAGCTATCACAGATGGGTAGGCAGCGTGCTAGCTGTTTACTTTTTCAAAGATAGTCCCTTTTCAGCTATATCTGTGCGTGGTAGCAGTATTTCAGAATGCCACCCAAAAAGAAGGCCGCAGCCAAGTCTGCCAAAGGGAAGACGCCCACAGTAGTAGATGGCCTTTCCACGGAGGAGATGTCGAAGGAGCAGCTGGAGGAGCACATTGTGCGGCTGCGGGAGGAgctggacagggagagggaggagaggaactaCTTCCAGCTGGAGAGGGACAAGATCCACACCTTCTGGGAGATCACCAAGAGACATCTGGACGAGAGGAAGGCAGACCTGAGGAACAGAGACCGGGAGATGGAAGAGGCTGAGGAGCGCCACCAAGTAGAGatcaagGTGTACAAGCAGAAAGTGAAGCATCTGCTGTATGAGCACCAGAACAGCATCTCAGAGCTGAAGGGAGAGGGCGTGGTCTCTAACAAGCTGATGCAGAAAGAGCACGCCGAGCTGGAGAACGAGCTCTGCAAGGGCATGCGTACCCTCAAAGTGGACATTAAGGAGCAGGAGCTCTCCAACGAGAACCTCGTCAAGGGCCTCAAACTGAAAAACGACCAGGAAATTACCAAAACGAGAAATGACTTTGAGAGACAAGTGCGAGAAATTGAGGCCAAGTATGAGAAGAAGATGCAGATGCTGCGTCAGGAGCAGGAcctgaggaggaagacagagatccACGAGATCGAGGAGAGGAAGAACAGCCAGATCAACACGCTGATGAAGAACCACGAGAAGGCTTTCAGCGACATCAAGAACTACTACAATGACATCACCCTCAACAACCTGGCCCTCATCAACTCACTCAAGgaaCAAATGGAGGAGATGAAGAGGAAGGAGGAGCGTCTGGAGAAGGACATGGCAGAGGTGCTGCTGCAGAACAAGCGCCTGACGGAGCCCCTGCAGAGGGCCAAGGAGGAGGTGACCGAGCTGCAGAAACAACTGGCCAACTACGAGAAGGACAAGACCTCACTGGCGGGGGCCAAAGCACATCTGAAGGTCGCAGGCAAGGAGATGAAAGACCTGAAGTGGGAACACGAAGTGCTGGAACAGAGGTTTAGTAAGGTCCAGGTGGAGCGTGATGACCTGTATAAGAAGTTCACCCAGGCCATCCAGGAAGTGCAGCAGAAGAGTGGCTTTAAGAACCTCCTGTTGGAGAGGAAACTGGGGGCTCTGACCAACACCCTGGAGAAGAAGGAGGCTCAGCTCAACGAGGTGCTGTCTGCCTCCAACTTGGACCACACCGCCCTCGGCGTGGTCACACGCAAACTGGAGGAAGTTTTGGACTCCAAGAACATTGCGATCAAAGACTTGCAGTATGAGTTGGCGCGGGTTTGTAAGGCCCATAATGACCTGCTGAGAACCTATGAGGCCAAGCTGCAGGCCTTTGGGATCCCTATGGAGGAGCTGGGCTTCAAGCCCCTGGAGAGCAGTGTGGCTGGACACTCCCTGGGCCAGGGCCCTGCAGGGCTGGTGTCTGTCCCCACATGAGAGGCTCCCAGGCTGGGCTCAGAGACACAAATACTCCCTGACCCACACAGACTATCACTTACTGCAGTGCTAATGTGACTCTTctttctatctcactctctctttattgtaacgtTTGATAGTTGCTGTTGATCTTCAGTAGTATTTCTATCTGTTTGCGAAGAGGAACTTGTCTTTTTCCAATACACTGTAAACATTtccaaataaatatattttaaaaagta

Function

GO:

id name namespace
GO:0055001 muscle cell development biological_process
GO:0048870 cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0031514 motile cilium cellular_component

KEGG:

id description
K19942 GAS8; growth arrest-specific protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610682 lncRNA upstream 12487 69686948 ~ 69687800 (+) True G539239
TU610655 lncRNA upstream 39982 69658498 ~ 69660305 (+) True G539213
TU610619 lncRNA upstream 149567 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 222948 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 229045 69469984 ~ 69471242 (+) True G539138
TU610704 lncRNA downstream 11202 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 36729 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 49152 69757886 ~ 69758091 (+) True G539272
TU610724 lncRNA downstream 53811 69762545 ~ 69762761 (+) True G539278
TU611306 lncRNA downstream 71450 69780184 ~ 69780410 (+) True G539783
trnav-cac-7 mRNA upstream 150 69700065 ~ 69700137 (+) True trnav-cac-7
XM_036980856.1 mRNA upstream 45898 69642275 ~ 69654389 (+) False LOC110526472
XM_036980857.1 mRNA upstream 45898 69643441 ~ 69654389 (+) True LOC110526472
XM_036980861.1 mRNA upstream 58168 69611784 ~ 69642119 (+) False LOC110526473
XM_021607476.2 mRNA downstream 15764 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA downstream 15765 69724499 ~ 69732656 (+) True LOC110526477
XR_005052225.1 mRNA downstream 30885 69739619 ~ 69756833 (+) True LOC118964926
XM_021607491.2 mRNA downstream 317428 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 328254 70036988 ~ 70038457 (+) False LOC110525047
TU610498 other upstream 332645 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 688325 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 697459 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 793440 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 888397 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 307608 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 327460 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 773216 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 843061 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 906791 70615525 ~ 70621474 (+) False cmc2

Expression Profile