RNA id: XM_021607474.2


Basic Information

Item Value
RNA id XM_021607474.2
length 2168
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC110526477
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69724498 ~ 69732656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTTTCCGAGCTACCATACAGAAAAAAACATCCCTGACAAGCAGCTGTTGCTACAATGTTACAGAACTCCCACGTGCGCAAATCAATCTGTGGTCACTTTGTGATAGTTTGACTAATCGTCAGTGATTTGTGAGAATTTTCTACATCTTCGACGAGAGGAAAATGGAGGCCGTTATTACGATTAATCCCGGGGCCACGAAATGGGACATCCGAGAGAAAGTTTGGGATTACATTGAAGCTAAGAATCTTGCAAACTTTCCAAGGCCTGTGCACAACAGAATCCCCAATTTTAAGGGTGCCCACACTGCCTGCGCCAAGGTGTCGGAGCTGCAGGTATTCAGTGAGACTGATGAGGTGAAGGTGGACCCTGACAAGCCGCTGGAGGGGGCGAGGCTGGCCGTGCTGCAGGCGAGGAAAACCCTGCTGGTGCCGACCCCTCGCCTTCGCACAGGACTCTTCAATAAGATTGTCCCGCCTGAGGGAGCAAGCAAAGAAGAACTGAGAGTGTGCTCCACCTCGCAGGGAGTGAAGGAGTTCAGCGTCCCTGTGGGTCTGGATTCCAACGTTCAGGTGGATCTTCTGGTGGTTGGCTCTGTGGCCGTGTCTGAGAAAGgTTACCGGATAGGTAAAGGAGAGGGCTTTGCTGACATGGAGTATGCCATGATGCTCTGCATGGGGGCTGTGACCGAATCCACTGTGGTGGTTACCATCGTCCATGACTGCCAGGTTGTTGACATCCCAGAGGATCTGATTGAGAGCCATGATATCACTGTGGACTACATCCTCACCCCGACCAGAGTCATCAAGACAGACTGCCAACGCCCCAAGCCCCAGGGCATCATCTGGACTAAGCTGAACGCTGAGATGCTGGAGAAGATCCCCGTGCTGAAGAAGCTCCGGGCCTTGGAGGAGGAGCAAGGGAAGGACGTGACCCTGGGGACCCACCCTCCCCCGCAGCCCAGGGAGAGGGCCAGGAGGGCGCCCCGGAGGGACAGAGAGCCCAGGTCAGAGGGTGATAGACCCCGGCGTGAGCCCAGGCGCAGGCCTAGACGGGACACCCAAGAGGACTCTGAGAGGGACCCCAACGGGGAGTCCAGAGAGGAGACTGAGCAGAAACCCAGACGACGCCCACCaagagtgaggagggaggggggtagagaggggggtagggatggtgatggggagggggagggaggccaggagggaggcagagaggggggtaGGAGGGTCAGGGGATTCCGCAATGGGGGCTTCCGTGAGGGGGGCAGAGATGGAAGTagggggagaggcagaggaggaggccGGGAGGGGGccagggggaggggaagagaggtggacAGGGATGGGGTCAGGCAAGAGGGCAGGGAGGAAGGTGGTGAGCCCCGTGAGCGCAGGCCCCCCCTAACTGTGACCACAGTGTACCTGGGGGGCATCCCTGCCGGGCTGCGTGTCAGCGAGCTGAAGACTGCTCTCCGGGAGAGGGAGGCAGCCCCCATCCGTCTCACGTGGCAGGGTGCTCAGCACCGGGCCTTCCTGGACTACTTAGACCCCCAGGCTGCAGACCAGGCCCTGGCCGCCCTGGAGGGGCTCTCCCTGAACGGCCATGACCTGCAGGCTGAGCTGGCCAAGAGCCAGAGGGGAGGCAGGAGGCCAGGTCCAAGCAACCGGAGGCCCAGACCAAATACAGGCCCCAAAAATACAGctagagaaagtagagagagtaCGAGTGAACCAGAGGCAGATTCCCCCAAGCAGGAGCTCAACCATAACGAGTAACTGTCTGCTTCTATGTCCATCTCTGTACAGAAGCCAAGCCAGCAGAAAGAAAAGGCTGTGGTTCATGAAAGGGAAGGATGATACCTTCACTGTACCAATGTGAAGTGTGAAAATATGTTTAATGCCTTAAGCAGAGTTTGGTTTGTCGTTATGGTTTTTAGTGTTGGTATTGATAACACGTAACCCCATTTACGTTTGAAATGTTCTTATACGGAAGTTTCATCCACACTGGCAGGCCTGTCTGTCAGTCACAAAGGAAGGAGAGGTTGGAGGTTTCCCTGTTAGTCTCTTTGTGCAGGGGCAATGTTTAATGCCCTACATGTAATGCCATCGGAATTCACAGGATATTTTGTGTACTAAATAAACCATACTTTGAGTTCATAGTTTTAA

Function

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity molecular_function

KEGG:

id description
K24991 MTHFSD; methenyltetrahydrofolate synthase domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610704 lncRNA upstream 4325 69719936 ~ 69720174 (+) True G539258
TU610682 lncRNA upstream 36699 69686948 ~ 69687800 (+) True G539239
TU610655 lncRNA upstream 64194 69658498 ~ 69660305 (+) True G539213
TU610619 lncRNA upstream 173779 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 247160 69474348 ~ 69477339 (+) True G539139
TU610711 lncRNA downstream 12807 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 25230 69757886 ~ 69758091 (+) True G539272
TU610724 lncRNA downstream 29889 69762545 ~ 69762761 (+) True G539278
TU611306 lncRNA downstream 47528 69780184 ~ 69780410 (+) True G539783
TU611310 lncRNA downstream 52640 69785296 ~ 69785615 (+) True G539787
XM_021607473.2 mRNA upstream 15765 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 24362 69700065 ~ 69700137 (+) True trnav-cac-7
XM_036980856.1 mRNA upstream 70110 69642275 ~ 69654389 (+) False LOC110526472
XM_036980857.1 mRNA upstream 70110 69643441 ~ 69654389 (+) True LOC110526472
XM_036980859.1 mRNA upstream 82380 69612731 ~ 69642119 (+) True LOC110526473
XR_005052225.1 mRNA downstream 6963 69739619 ~ 69756833 (+) True LOC118964926
XM_021607491.2 mRNA downstream 293506 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 304332 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 316494 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 316494 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 356857 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 712537 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 721671 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 817652 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 912609 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 283686 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 303538 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 749294 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 819139 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 882869 70615525 ~ 70621474 (+) False cmc2

Expression Profile