RNA id: XR_005052225.1


Basic Information

Item Value
RNA id XR_005052225.1
length 2028
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118964926
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69739619 ~ 69756833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCCCgcccagtcccctcccactcacacACATCTGCCTGgctttagtttgtctgggagcagtTTTTTTCCAACTCAGAATCAGAGAAGTGGGTCTTTCTTAACACtcaaaattacattttattgaacAGAAAattatcttaaaaaaaaaaaaagaatggcgTGAAACAGGACTTATTTTCAAATATAGGACATAGCCAACTAGAATGTCTGTTTTTCAGAATATAAATGGTAGCCTAATACAACAGAGGCCTATGCTTGAACTTTGCAACGTTGGGACATGTTGTCTTTATTTTCGCAACGACAATATTtcttcaaaacatttttttgaaaatgtatgttTTAGTAAGCTTGTATGCACAACCACCGTGATATATAAAACTGGTTTTCCACTTGTCAGATACAGCAGGCCAACCTCACCATAGCACATTTCACTGACTTTGACTTATTAAAGTatgaagtatatttaaaatgttGCTTAAAATACGCTTATTTTAAAGAAAATGTCTCTATTCAAGACCACGCTGCTGATTTCTTTAAAAGATAGACAGGAACATGGGCAGGATGTTTATACAGCAAAATGTAAACATTTTCCCTGGCCTTCTTTAAATAAAAAATCAAGCAAAAAGACTCTCTAGATCAGCTCATACTCAATCTGATGCATTATGTCCGTTTTAGACAGCTCCTTGTGTATATGGATAGGACTTTTCAACGTAAATGCAGAAAGGGATTCAATCATGAATAATTATTATGTTCACACAGTAGAACTGAGGGTAAGAGCGCCCTGAGCCTAGCCGAATACTGTGCACTGAAACTCGGATGAGGACTTCAGATCGACGCCCACCAAACTCTCTCCCCTCAGAATGGTGCTCGAATCAAGCCCTCTgtgatggatgagagagagaaggttttCCAGTGATGGCAACAGTTCCTATGACGACCAGACCTCCACCGGGGGATTGCGCCTGTCAGACAGTGCTAATGATAATTGAGAGgCTGGAGTGGGCAGGCGTGTGGGTTTGGCCACAGGAAGCCGTGAATTCCTTGAAGAACAGAGAGTGTCAGGGCCCAGAACGCAACTTGGGGGGGGGGCTTACTGTACCTTGTAACGTCTCATAATCCTCCTAGTTGACCCCTGACCCCGGCCTGTGTTTGTATCAGGTCATCAACGTGAGGAATTGTAATGAGTCACTCCAGCAGTGTGTTTACCTTCTGGAGTCACGCAAGGAAGGAAATAAGGCACGGTCTTCTAAAAGTGTCAAAGTGAGAGAGAATAGCAGCAGTATTAGAGCAGAGCCCTGATTCATCTCACTGTGACTGACCTCTTGAACCGTTACACTGGGTTTATTTAACCTATTCACTACTGTAGGGAGACTAGCTACAGATCAGCCAAAACAGGGAGTAAGTCTACAATACTGTATGAAAACACAAGGTATGAGATTAATAGTGTAATTCTGTAATTGAAGTCTGATTCGTACCCCAACTCATTGAGTGAAATGATCCGTGTACTGCAGTATGTGGATACAACTTATTTTTGCTATCACTGTGTAATATGTTGCTAATAGACCAAACATGTATTATTTTTGTCATAATTCTCTGTTGTGTGTTgcagtcatttttttattttttttgctatgCCCAATGAAATTTGGAGAGATTTAGTATTTTCCTTTGTCTCATGCAACAATCATAAATTATGTGTATGTGATTTTTCTGTTTAATAATAATTTATTGCAATATATTTCTGACTCCAAGATATAGATTATATATGGAAGATCCCTTGTAATACACTTTGAAGGAGAAATCTGCACTCCCAAATACATCGTTTTTAAAATCTTGAACTTACAATGAGCTCTTGAAACTGGAATGAGTATGGAACTGTGGCCAACGCCTGTGATTAAAATACAATGTCCTGGCCTACCATCACGCCTTCCACACCGTGGGCTTGTGTGATTGCACAATTGTTGTTTTTGAGCAAGTGCCCCTGTTAGTTTTACTCTGTAAATAAATATGTGCTCCGAGCTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610704 lncRNA upstream 19445 69719936 ~ 69720174 (+) True G539258
TU610682 lncRNA upstream 51819 69686948 ~ 69687800 (+) True G539239
TU610655 lncRNA upstream 79314 69658498 ~ 69660305 (+) True G539213
TU610619 lncRNA upstream 188899 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 262280 69474348 ~ 69477339 (+) True G539139
TU610718 lncRNA downstream 1053 69757886 ~ 69758091 (+) True G539272
TU610724 lncRNA downstream 5712 69762545 ~ 69762761 (+) True G539278
TU611306 lncRNA downstream 23351 69780184 ~ 69780410 (+) True G539783
TU611310 lncRNA downstream 28463 69785296 ~ 69785615 (+) True G539787
TU611329 lncRNA downstream 46345 69803178 ~ 69803444 (+) True G539806
XM_021607476.2 mRNA upstream 6963 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 6963 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 30885 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 39482 69700065 ~ 69700137 (+) True trnav-cac-7
XM_036980856.1 mRNA upstream 85230 69642275 ~ 69654389 (+) False LOC110526472
XM_021607491.2 mRNA downstream 269329 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 280155 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 292317 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 292317 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 292317 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 371977 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 727657 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 736791 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 832772 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 927729 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 259509 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 279361 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 725117 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 794962 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 858692 70615525 ~ 70621474 (+) False cmc2

Expression Profile