RNA id: XM_021607491.2


Basic Information

Item Value
RNA id XM_021607491.2
length 1772
RNA type mRNA
GC content 0.40
exon number 5
gene id emc8
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70026162 ~ 70028929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCACAgcggtacgtgtgtgtgtgtaatatggtGCCGGTGCAAACCACCAGAGAGAAGCCAAGCAGCGTTCATTTGTAGTAGGATATAACGTTACCGTCGTGACCAACAACATTAATGCACTGTAACATTCACGAAGAGTTGCCTTTATGTAGGTAGCTAGTTATAAGAGACTCGATTACCGTAGTCAACCTGGCAGagctgtcactgtctctctgttgtaTCGGGTATGATATCCGTTGGCTAGCTGTAAAGCTAGCAGTCTCCAGACCATCCTTGTACAATTAGCTAGTTTAGTGTTTATCTCGAAATGAGAATGAGTATTAAATTGACAACTCAGGCCTATTGCAAGATGCTTTTGCATGCTGCTAAATATCCCCATTGCGCCGTGaacggattactggttgctgagaaacagaaggagaagaaAAAAGACAGCCACTCCACTCCAATCCTCTGTGTGGATTGTATACCACTATTCCACGGCACACTTGCATTGGCACCTATGCTGGAAGTGGCACTTACATTGATTGACACGTGGTGTAAAGAGAACAAATATGTCATAGCTGGGTATTACCAGGCCAACGAGCGCACAAAGGACTTCAGACCTAACCAGGTTTCTGAAAAAGTTGGGGCCAGGATTGCAGAGAACTTCAGCGAAGCAGCAATGATTATGGTGGACAGCACCAGATTCACCATGGGCTGCTATGAGCCCATATTAGCCATCTATGACCACCATGAAAACAAGTGGAAATGCAGGGACTGTAATGTggacAGCTTTGACGACTGGTGTGAGGCTCAGAAGATCACGTCGGCTCTGCTGGAGGGCAGGTCCTACGAGAGCCTGATCGACTTCGACAATCACCTAGACGACCTCAGGAATGACTGGACCAACCCTGAGATCAACAAGTCTGTCCTGCACCTGTGCTAAGCCTCCCAGCTGAGTGACTGCACTGCACCAGACAAAGACATTGCGGCCAAAACGGCGTTGGACGTGCTAATACTACTGTAGCGCAGGAATGCTGAATGCTAAGGCTTTGTTCCCAGTGAATTGCTCTCACAGGGAAGAGAGCTTTCAGAGCACTGGTCAGTCTATTTTCATGCGCAAGCAGGACACAGGTACCATTGGGATCTTTGTTCCCGTAGTAGGGAGGATCAAGGTGATCAAGACCTAGGTGTCATTCAATGCAACGTGTTAATTTTCTTTCTAATTTTTTGAGTACGGGTTTTGTATGCTAATAGTTAATGAAGATGTATGCGAAATTCTGAATGGTAGGGAAACATGAATATCATTTATTTAGACTTCTATTGAGTACTTTAGGTTCTTTAGAAATAGTAGTGTTTCAGAGATGATAGACATTATAAATTATTGTTCTGAGATTTGACTTATTGAAATATTACAGAATTGTAATCAACAAGAGAGATgttatgttttttatttcactACCTTAATGTTTATATTCTCAGAACTGTTTCACTCCTGTTTTCTTATAAGAGATGGCTTAGTATTTATTTGTTAAAGGATGATCTGATTATTCTTTACTTTATTTGTTGAAATAAATCTTGTTATTGCATAAGTAATAAACTAAGTCACTTGGGATTAAAGCATTTGCTAAATgtccatattattattattgttgattCATGAATTATATATTTCGGGTTGGATTAAGATATAAAAgcctaaataaaataatttgaGGTTTTGAGATATTAAACCTTTTTGTAAAAAAACATTTGGACTGAATGTACAAATAAAATGTAACTTTTCAG

Function

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611490 lncRNA upstream 9032 70015270 ~ 70017130 (+) False G539959
TU611492 lncRNA upstream 9032 70015270 ~ 70017130 (+) False G539959
TU611479 lncRNA upstream 23339 70002196 ~ 70002823 (+) True G539949
TU611457 lncRNA upstream 42645 69981682 ~ 69983517 (+) True G539927
TU611453 lncRNA upstream 50864 69975094 ~ 69975298 (+) True G539925
TU611514 lncRNA downstream 17884 70046813 ~ 70047132 (+) True G539980
TU611519 lncRNA downstream 25288 70054217 ~ 70054496 (+) True G539985
TU611516 lncRNA downstream 27132 70056061 ~ 70057028 (+) True LOC110526484
TU611520 lncRNA downstream 31038 70059967 ~ 70061147 (+) True G539986
TU611545 lncRNA downstream 61031 70089960 ~ 70090983 (+) True G540008
XR_005052225.1 mRNA upstream 269329 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 293506 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 293506 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 317428 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 326025 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021604994.2 mRNA downstream 8059 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 20221 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 20221 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 20221 70049150 ~ 70058063 (+) False LOC110526484
XM_036980869.1 mRNA downstream 522834 70551763 ~ 70558098 (+) False LOC110526485
TU611493 other upstream 6685 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 658520 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1014200 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1023334 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 1119315 68906045 ~ 68906847 (+) True G538859
TU611507 other downstream 7265 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 453021 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 522866 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 586596 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 586596 70615525 ~ 70621474 (+) False cmc2

Expression Profile