RNA id: TU611507


Basic Information

Item Value
RNA id TU611507
length 1922
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC110525047
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70036194 ~ 70039507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacatgtttctgtggacataatggaaactatttggaattttcgtctgcgttgtcatgaccgctctttcctgtggatttctgaacataatgcgacaaacaaactgaggtattttggatataaaaataatctttatggaacaaacggaacatttgttgtgtaactgggagtctcatgagtgaaaacaaccaaagaccatcaaagGGCTACCGGTCGACGTGCCTGTGTGGCTGGCCCTCAATCTGAAGGATAGTGCCACCAGAGTGGATGGATGTAGAGAAACTGGAGGAGATAAGAGAGCtagagaggaaggaagacacattcACCCCTGTCCCCAGTCCATACTACATGGAGCTGACCAAGCTGCTACTCAATCATGCATCTGATAACATTCCCAAAGCGGATGAGATCCGCACACTGGTGAAGGACATCTGGGACACGCGCATCGCCAAGTTCCGCCTCTCCGCTGACAGCTTCATCAGCCAGCAGGAAGCACACGCCTTGCTGGATAACCTAACTCTGATGTAGATTAACATGACACAGTCGTTCCGGCTGGACACTCTCAACTGCATGTATAAACTGCGTTGAAACCTCCAGCTCGGCTCCAGTGGGGGCAAAGCCCAGCACCACTGATCTGTATTTACGGACTAGAACTGGACCTGGGCCGCAGCCTCTCCTCTCCAAAGCAAGATGGAGCAGACTTAGGCCCAGCTATACTAAACATTTGCACCGGCTGCAAAGTAAAATAacggaatcacggaatccagacattaaaacagaattcaactaaattctaaaatgcattgaacttagtagggaatgTTATTGAACATTAATTAGCCCAAGTTTATCATAAGGCATGAacagaatgcatcagtgatttgTATTTCCTGTAACTTTTctattaaaaaatgttttttttttagtgAAAACCTGAATTTACGGACTAGAACTGGACAAAAACCTGAAAAACAAAATTTAAATTTGAATAAAATCGAAAAAAAATAaacttcttgtgacatcgggtgctgtaggtgtcatggagggcaggtagtttgccccctagTGAGGCGTTGTGCagactctggagagccttgcggttgagggcggtgcagttgccgtaccaggttgtgatacagcccgacaggatgctctctatTGTTTATctataaaagtttgtcagggttttgggtgacaagccagatttcttcagcctcctgaggttgaagaggcactgttacgccttcttcaccaaactgtctgtgtgggtggaccatttctgtctgtctgtgttgtgtacgccgaggaacttataACTTTCGACtgtctccactgctgtcccttcgatgtggataaaggggtgctccctctgctttttgctgaagtccacgatcatctcctttgttttgttgacgttgagtgagcggttgttttcctgacaccacactccgagtgcactcacctcctccttgtaggctgtctcgttgttgttggtaatcaagcccactactgttgtgccatctgcaaacttgatgattgagttggaggtgtgcatggtcACGCAGTCTaagggtgaacaaggagtacaggcgggggctgagaacgcacccttgtggtttccagtttacatagagtccagtgaagttcctttagggctgtcttggtgtctgcttgagggggaatgtacccagctgtgactataactgatgAGAATTCTCTTGGGGGGTAAAATGGCcgacatttgattgtaaggaattctaagtcaggtgagcagaaggacttgagttcctgtgtgttgttatgattacaccatgagttaaTCATGAACCACCACACATAAGATATCCTGGGGTAGCAATGTgagaaaaaatacataaaaaaaacgaaatactgcatagtttcctaagaactcgaagcgaggcga

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611490 lncRNA upstream 19064 70015270 ~ 70017130 (+) False G539959
TU611492 lncRNA upstream 19064 70015270 ~ 70017130 (+) False G539959
TU611479 lncRNA upstream 33371 70002196 ~ 70002823 (+) True G539949
TU611457 lncRNA upstream 52677 69981682 ~ 69983517 (+) True G539927
TU611453 lncRNA upstream 60896 69975094 ~ 69975298 (+) True G539925
TU611514 lncRNA downstream 7306 70046813 ~ 70047132 (+) True G539980
TU611519 lncRNA downstream 14710 70054217 ~ 70054496 (+) True G539985
TU611516 lncRNA downstream 16554 70056061 ~ 70057028 (+) True LOC110526484
TU611520 lncRNA downstream 20460 70059967 ~ 70061147 (+) True G539986
TU611545 lncRNA downstream 50453 70089960 ~ 70090983 (+) True G540008
XM_021607491.2 mRNA upstream 7265 70026162 ~ 70028929 (+) True emc8
XR_005052225.1 mRNA upstream 279361 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 303538 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 303538 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 327460 69700287 ~ 69708734 (+) True gas8
XM_036980865.1 mRNA downstream 9643 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 9643 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 9643 70049150 ~ 70058063 (+) False LOC110526484
XM_036980869.1 mRNA downstream 512256 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 555240 70594747 ~ 70599188 (+) False si:ch73-103b9.2
TU611493 other upstream 16717 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 668552 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1024232 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1033366 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 1129347 68906045 ~ 68906847 (+) True G538859
TU611739 other downstream 442443 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 512288 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 576018 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 576018 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1760533 71800040 ~ 71804462 (+) True G541903

Expression Profile