RNA id: XM_036980869.1


Basic Information

Item Value
RNA id XM_036980869.1
length 1536
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110526485
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70551763 ~ 70558098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAACCAACTAGCTCGTAACCCGGGGCAGGCGAGAGCTTGGCAATAAGGCAAATACCGCAGCTCAACAGTGAGGTGAAGTGACGCTTGAGCAAATCCAACATGAACACCATCTTCTCAAGagacagacagataaagagcATGGAGCTGACAGTGAGCCATGCTGAGAAGTACCTGGGTCAGTTCTGCAGCCTGCTGGCCTCTTACACCAGGAAGACAGGCAAGCTGAGGGACCAGGCTGACATGCTGGTCAGACAGCTCAATGACTTCTCGAATACTGAGGACCCAGAGCTCCGTACCTGTCTGAAGAACCTGGCTGAAGACCTGGCCATGGTGCAGGACTACCGCCAGGCtgagATAGAGAGGCTGGAGACCAAAGTCGTCACTCCCCTCAAAGCCTATGGAGATATAGTTGAAAACAAGAGAGCAGATCTGAAGAGGTTCAATGCTGATCGGGACAGAGCGCTGAAAGAGCTGCAGAAACTGGAGAAACTCCAGCAGAAGGATCCCTCCAATAGACAAAGAATTTCACAGGCAGAGGTGAATGCTCAGAAGGCGACCAATGATGCTCACCGCAGCACCAGACAACTGGAGGAGACCATCAGTGACTTCCAGAGACAGAAACTGGAGGACATCAAGAGGATCTTCACAGACTTCATcacagtggagatggtgttccATGCCAAGGCTCTTGAGGtctacacacacaccttccagaaCCTGGACAGCATGGACATAGACAAAGACCtggagCTGTTCATTGGGAGGATCAGGGTGTCTGACAGCCCTCTGGACAACCAGACCCTGCTGCCCTCCTCTATGGCCCACCAGCCTAGTCCCACCCTGGGCTCCAGCCTCAAACACACTGCTGAATCAGCCAAGAAGTCCCGTAGCAGCATCCTACAGCGCcagaggggtgtagaggaggaggaggaggatgaagaggaggagtatGAGTCAGAGATAGAGGCTCAGCAGAGCAGGCAATCCTACGCCTCTCAATACACCCAAATACTCAGACAGAAGAACTGATAGATTGGAggtacacacacaaatgcacccaaaaagacacacacacacagagagagaaagacactgcGTCTcttcacacacatgtacacacacattcaGATATCCGTATAGATCTGCTGACAGATGAGAATATGTAGTCAGTGTCTGTTGTCAGGTAAAGTCAATACTCAGGGTATGTACCGTACTGCAATAGATCTGTTGATGACTGTGCAGATGTGTTCCTGTACAGGGTTTGCAGTAAGTTGTTCTGCAAATAATGCTTTGTCAATGGAGGCATTTGGCACTTAAGACAGACTGCAATCATTTGTAATCAGCCATAGCTGAGGTATAGCTGAGGAGTGATAATGTGTTCACATTTTATAATGAAAAACAAATCAATGTTCAGTAATGGTTGTTATTTAGAATGGGAAAGTGAAGAATACATTATATTCCTAGATATAAATGTAAACATATCAAATAAATTGACCCATTTGCATTAAACCTGAATGAGAACTCTCATCATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611767 lncRNA upstream 16550 70534488 ~ 70535213 (+) True G540201
TU611751 lncRNA upstream 44045 70507362 ~ 70507718 (+) True G540191
TU611747 lncRNA upstream 54159 70497395 ~ 70497604 (+) True G540187
TU611746 lncRNA upstream 55721 70495842 ~ 70496042 (+) True G540186
TU611740 lncRNA upstream 65791 70485739 ~ 70485972 (+) True G540180
TU611788 lncRNA downstream 20522 70578620 ~ 70578901 (+) True G540221
TU611802 lncRNA downstream 35707 70593805 ~ 70594162 (+) True G540228
TU611804 lncRNA downstream 37453 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611803 lncRNA downstream 39754 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611805 lncRNA downstream 45297 70603395 ~ 70603644 (+) True G540231
XM_036980865.1 mRNA upstream 493700 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 493700 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 493700 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 513306 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 522834 70026162 ~ 70028929 (+) True emc8
XM_021607495.2 mRNA downstream 36649 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 57378 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 57378 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 57393 70615491 ~ 70621510 (+) False cmc2
XM_021604957.2 mRNA downstream 57394 70615492 ~ 70621510 (+) False cmc2
TU611739 other upstream 67395 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 512256 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 532286 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1184121 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1539801 69011606 ~ 69011962 (+) True LOC110526955
TU611814 other downstream 57427 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 57427 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1241942 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1543282 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1592922 72151020 ~ 72152394 (+) True G542100

Expression Profile