RNA id: XM_021604958.2



Basic Information


Item Value
RNA id XM_021604958.2
length 660
RNA type mRNA
GC content 0.46
exon number 3
gene id cmc2
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70615476 ~ 70621510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATTGTTTGTCTTCCAGTATTGTTGGAGTGGTAAGCCCTTAACTCAGAATGCACTCTGATCTGTCGCCTCACCTGCACACGGATGAGTGCAACATACTGATAAACCTGCTGAAGCAGTGCCACACGGAGCACAATGTCAAGAAGTTCTTTGGCCATTGCAATGATATGGACCGTGCCATGAGAGCTTGTTTGAAGGACGAGCGAATTGCAAAGAGGGAGAAAAGCAAACAGCATGCTAAAGAGATGAGACAGAGGCTGAAAGACGGCCCTAAGGAAGACTTCTGAATGGCAGTAGACTGAGCCGATGCTCTAGGAAGGGCCACAGGAACTGGGTATTGGAGGACTTACTGGGGCCTACCATGAGATGCCTACCTTACTGCCTGGACATCTGGCCACAAGAGGTCTCTCATAATGTCGGTTTCAGTATGTGTGTTAAATAGTGTTTGGTGGATGATCAGTTCGCTACTCAGGGATCAGAGCTCATATGGGGGGGGTCTGTTTTCGAGGACTGCTACCCAACCCCCTGCAATCATGGTTGATTGCATATTTAAAGTACTTAACAAAATAATTGTTTTAAATTGTCTGCGTTTCTGACTGGGGAATGGCAATGATGATTGAACACTGGATTTCTATTGAATAAAGTGTATCAAAACACAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU611811 lncRNA upstream 7877 70608355 ~ 70608611 (+) True G540237
TU611807 lncRNA upstream 10609 70605642 ~ 70605879 (+) True G540233
TU611805 lncRNA upstream 12844 70603395 ~ 70603644 (+) True G540231
TU611803 lncRNA upstream 17677 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611804 lncRNA upstream 20301 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611819 lncRNA downstream 2323 70623833 ~ 70627142 (+) True G540239
TU611831 lncRNA downstream 7331 70628841 ~ 70629118 (+) True G540249
TU611833 lncRNA downstream 10822 70632332 ~ 70632799 (+) True G540251
TU612356 lncRNA downstream 75984 70697494 ~ 70697738 (+) True G540714
TU612387 lncRNA downstream 103482 70724992 ~ 70725227 (+) True G540745
XM_021607495.2 mRNA upstream 17300 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_036980869.1 mRNA upstream 58390 70551763 ~ 70558098 (+) False LOC110526485
XM_036980865.1 mRNA upstream 558425 70049150 ~ 70058063 (+) False LOC110526484
XM_021607510.2 mRNA downstream 1060091 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 1340414 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 1389585 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 1452640 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 1496228 72117738 ~ 72135463 (+) False LOC110526510
TU611726 other upstream 62568 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 132120 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 576981 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 597011 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1248846 69361641 ~ 69367642 (+) True G539068
TU613619 other downstream 1178530 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1479870 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1529510 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 2043950 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 2144171 72765681 ~ 72766851 (+) True G542890

Expression Profile