RNA id: TU611813


Basic Information

Item Value
RNA id TU611813
length 1587
lncRNA type sense_over
GC content 0.42
exon number 3
gene id cmc2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70615476 ~ 70621510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtgtagctagctagcatgttaCCAGCATGTCCTCCTTTGATCAAATACATTACTAGGTTTACAATTTAATGTTATGTCAAAattgttaaacacatttttcaaGCTGTGTACAGTAGCTAGTTAGATGTAAATACATCGACAGTAACCTGGCAGTAATAGGAGTTAAAACAAGGGGTTGAAAGAACGTTGCATTTGCCCTTAAGTGGTATGTCTCGCTAATAGGCATTGGCAGCTAGCTACATTTTGTCAACTTGCTATCTACGATATATTCTATTCCTGGAAGATAGACATCTCAATGATATCCCAACTGAACTGGTAATATCTTTATTCGACTAGCTACCTTATTCGATTCACAGCTTTTAAGGTAATTCCAGTCTATTTTGGTAGCTACCGTACTAGCTACCAGTCTGAGTTGCACTGTAGCTAGAACAGTCTGTAACTAACTAGCATCATTTAATTTCACAACTTGGCCCCTTTGCTGCATACACATGAGTCTATTTCAACCGGTCTCTGAATATGTAACAAAGTCCATCTCCATACAACCACAACTTTATGACTGTTTATAACAACGCTGCCAACTGCTAGCCTACTTGTTACAGTAGAGGCTGAAATCACTTTTCGGCAATCACAGCTTTGAGATTAATCAGGATGAAAGGATGGGCTTGTATGACAATTGCCACTCCTCATTGTGTCTGGTACTCTGTCCTTCATTAACCCACACAGGCAATGCTATCCATGTCTTTACCTAGACTTCTATTAGTTTTAACCTGCCCACCTGTGTTTTACACCTGTTTTCTCTTTCATTGCAGGTAAGTGTAAACAGAAAACGGATCATCCCCATGAGTTTGCAGGATGGAGAGGGACTGGGTGGATGGAGTATCCTTTAGAGTAGACACACATAACAGAAACCCAAATAGTCAAATAGTAATTTTCAGCATACATTGTAGTCACAAACATGGTTGGTATTGTTTGTCTTCCAGTATTGTTGGAGTGGTAAGCCCTTAACTCAGAATGCACTCTGATCTGTCGCCTCACCTGCACACGGATGAGTGCAACATACTGATAAACCTGCTGAAGCAGTGCCACACGGAGCACAATGTCAAGAAGTTCTTTGGCCATTGCAATGATATGGACCGTGCCATGAGAGCTTGTTTGAAGGACGAGCGAATTGCAAAGAGGGAGAAAAGCAAACAGCATGCTAAAGAGATGAGACAGAGGCTGAAAGACGGCCCTAAGGAAGACTTCTGAATGGCAGTAGACTGAGCCGATGCTCTAGGAAGGGCCACAGGAACTGGGTATTGGAGGACTTACTGGGGCCTACCATGAGATGCCTACCTTACTGCCTGGACATCTGGCCACAAGAGGTCTCTCATAATGTCGGTTTCAGTATGTGTGTTAAATAGTGTTTGGTGGATGATCAGTTCGCTACTCAGGGATCAGAGCTCATATGGGGGGGGTCTGTTTTCGAGGACTGCTACCCAACCCCCTGCAATCATGGTTGATTGCATATTTAAAGTACTTAACAAAATAATTGTTTTAAATTGTCTGCGTTTCTGACTGGGGAATGGCAATGATGATTGAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611811 lncRNA upstream 6914 70608355 ~ 70608611 (+) True G540237
TU611807 lncRNA upstream 9646 70605642 ~ 70605879 (+) True G540233
TU611805 lncRNA upstream 11881 70603395 ~ 70603644 (+) True G540231
TU611803 lncRNA upstream 16714 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611804 lncRNA upstream 19338 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611819 lncRNA downstream 2359 70623833 ~ 70627142 (+) True G540239
TU611831 lncRNA downstream 7367 70628841 ~ 70629118 (+) True G540249
TU611833 lncRNA downstream 10858 70632332 ~ 70632799 (+) True G540251
TU612356 lncRNA downstream 76020 70697494 ~ 70697738 (+) True G540714
TU612387 lncRNA downstream 103518 70724992 ~ 70725227 (+) True G540745
XM_021607495.2 mRNA upstream 16337 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_036980869.1 mRNA upstream 57427 70551763 ~ 70558098 (+) False LOC110526485
XM_036980865.1 mRNA upstream 557462 70049150 ~ 70058063 (+) False LOC110526484
XM_021607510.2 mRNA downstream 1060127 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 1340450 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 1389621 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 1452676 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 1496264 72117738 ~ 72135463 (+) False LOC110526510
TU611726 other upstream 61605 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 131157 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 576018 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 596048 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1247883 69361641 ~ 69367642 (+) True G539068
TU613619 other downstream 1178566 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1479906 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1529546 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 2043986 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 2144207 72765681 ~ 72766851 (+) True G542890

Expression Profile