RNA id: XM_021607530.2


Basic Information

Item Value
RNA id XM_021607530.2
length 2743
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110526507
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72011095 ~ 72021875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGTATATAGGTATATCATAGCAGATACAGCAGCAGTCAGTGGACTGCCTTACTTATTCTCACTAAAACATATCAATCAAAGGACTTTGACATGTATTCAAACAAGATTGACGGGCCGCGCAGAGGAAGGTCTTTCGACTCTATGAGTTCTTCATTGCACACTTGTTACGAGGAAAAGCAACTGAATAATGAGATGAAAAAGTGTACCTTCAGCAAGATCGACGAGAACAAGGACAACAAGAGTTCATCTTGGGAGAATGGTCGCTCTTTAGAAAAGGGTCGCACGGCCATCGCCTTTTCCCTCAAGAATGAAGTTGGCGGGCTCGTTAAGGCGCTAAAACTTTTTCAAGAGAACCACGTCAACCTTGTTCACATCGAGTCCCGAAAATCGAGGCGGCGCGGCTCAGAATTTGAGATCTTTGTTGACTGTGACAGTGGCCACGAGCAACTCAAGGAGCTCACTGAGCTGCTACGAAAGCACGCCGCCAACGTAGTTGATATGGACCATGATCAACCTGACAATTCCAGCCTGCCTGAAGAAGACACTGAAGATATTCCCTGGTTCCCAAAGAAAATCTCAGACCTGGACATGTGTGCTAACCGTGTCTTGATGTATGGCTTAGACCTGGATGCTGATCACCCAGGCTTCAAGGACAACGTCTACCGCAAAAGAAGGAAACACTTTGCTGATCTTGCCATGAGCTACAAACAtGGGGATCCAATTCCGCATATCGAGTTcacagaggaggaggtgaagaCCTGGGGTGTGGTTTATCGGGAGCTAAATAAGCTGTATCCAACCCATGCTTGCCGGGAGTACCTGAAGAACCTGCCACTGCTCTCCAAGCACTGTGACTGCAGGGAGGACAACATCCCCCAGCTGGAAGATGTGTCACACTTCCTCAGAGaGCGCACAGGCTTTATCATTCGGCCCGTGGCAGGTTACCTCTCCCCACGAGACTTTCTGGCAGGTTTGGCTTTCCGGGTTTTCCACTGCACTCAGTATGTTCGCCACAGCTCTGACCCTCTCTACACACCTGAGCCAGACACATGTCATGAGCTGTTGGGTCATGTCCCTCTGCTGGCAGAGCCTAGTTTTGCCCAGTTCTCCCAGGAGATAGGTCTGGCTTCTCTGGGGGCCTCAGATGAGTCTGTCCAGACGCTGGCCACCTGTTACTTTTTCACAGTAGAGTTTGGCCTGTGTAAACAGGAGGGAAAGATGAGAGCCTACGGCGCAGGACTTCTCTCCTCTATCAGTGAGCTGAAGCATGCACTCTCCGACAATGCAAAGATCATGCCCTTTGACCCCAAGGTCACCTGCAAGCAGGAGTGCATTATCACGACATTCCAAGACGTCTACTTTGTGTCAGAGAGCTTTGAAGAGGCCAAAGTCAAGATGAGGGAGTTTGCCAAAACCATCAAGCGTCCGTTTACAGTGAGGTACAACCCGTACACCCACAGTGTGGACGTGCTGAAGGACACATCCAGTATCAACAGCATGGTGGAGGATCTGAGACATGAACTAGACATCGTGGCCGACGCCCTACAGCGCCTTAACAAACACTATGCTGTCTGACCAGCCTGCCTGGCCCTCATACTTGcaagggttgcaaaattctgctAACTTTCCCAACATTTCCAGGTAGTCCAGAAATCCCGGTTGGACAGAATCAGGAGGAAACAAGCAAGAAATATGATATCCTCCAACCAGTATTTTTGGAAAACATGGgaattttcagaaatgttgcaACCATATACCTGACACAGCCCTGTACAGCTGTCTGTAGTTGTCTACCACCTGATCCTTACCAAGCAGCTCGCTGCTTTAATCCTACTCACTGATATCCCCAAACAGCCTTTTACCTACAAAATAAATAACTCTTAaaattcaaatgttatattaaCTTTATTAAATTATTAACCAGTAGTTTACTTTAAAAGTCAATACATTTTTGGGTTTGTCATGTGAATAATAATATTGACTAAGGATGATTAGAATGTGACCGAAACGGACCTTTCCTTGGCTCTTGCTTATAATTACTGATATTCTCTTGTTTTTTATATGCAGTATTTATTTTCTTTTGAAGGTTCTATCTTAATGCAACAGTCGTCttatatatattgtattgtactCTATTGGCATGAACCGTTTCAATAAAGTTGTGAATGTGCTAGTGTGGATGTAAAGTTACATGCTTGCGTGTATAGTGAGTGACAGTCTATACATGTATTATCACATTGCACAAAGCATAAGGATGTGGTAGTAttatatgattgtgtgtgtgtgtgtgtgcgtgtaccttATCGAccttctgctgctactactgttgaccTCCAGTTGTCTATTTATCATAAGATGTTCAAGGAAGGAATTTATGTGCATGTATCAGTGTTTGGAAGATGACATGAATGTACTTCTATTGAAAATCTTTAATTTGTGTAAAAAGATCCCTGGTAAACCAATCCTTGCATTGGTAAGTGGTTGTCTGCATTCTGGGCTTTGAGCTATGGGGAAATATTTACAGTAGTTTCTTTGTTCTGTTTTTCTCTCATTAAATGTACTCCATGTTCACACACTGTGTTATACTATGTGCTATGATTGCTAATAATTACTCATCATTATCATTAACATTTCCTTAGAGAACACATAAAAAGCTAGCCACATCCAGGAGgatatatataaatgcaacatgtttcatgagctgaaataaaatatcccataaatgttccatacacacaaa

Function

GO:

id name namespace
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00502 TPH1_2; tryptophan 5-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613779 lncRNA upstream 8876 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 9874 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 33614 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 34154 71976616 ~ 71976941 (+) True G542010
TU613758 lncRNA upstream 35577 71975196 ~ 71975518 (+) True G542009
TU613861 lncRNA downstream 119641 72141516 ~ 72142559 (+) True G542092
TU613914 lncRNA downstream 252441 72274316 ~ 72292811 (+) True G542137
TU613943 lncRNA downstream 274869 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 320037 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 323062 72344937 ~ 72345730 (+) True G542179
XR_005052233.1 mRNA upstream 43293 71961924 ~ 71967802 (+) False LOC118964930
XM_021607510.2 mRNA upstream 320735 71681601 ~ 71690360 (+) True LOC110526495
XM_021604954.2 mRNA upstream 1389585 70615491 ~ 70621510 (+) False cmc2
XM_021607535.2 mRNA downstream 52275 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 95863 72117738 ~ 72135463 (+) False LOC110526510
XM_021607536.2 mRNA downstream 96631 72118506 ~ 72135463 (+) False LOC110526510
XM_021607538.2 mRNA downstream 96634 72118509 ~ 72135463 (+) True LOC110526510
XM_021607549.2 mRNA downstream 135315 72157190 ~ 72181309 (+) False LOC110526514
TU613619 other upstream 206633 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1389621 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 1389621 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1457175 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1526727 70481950 ~ 70484368 (+) True G540179
TU613820 other downstream 79505 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 129145 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 643585 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 743806 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 1016746 73038621 ~ 73145347 (+) True LOC110526543

Expression Profile