RNA id: XM_021607535.2


Basic Information

Item Value
RNA id XM_021607535.2
length 3319
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110526509
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72074150 ~ 72098245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAAGGATTGCGTATCCTACATATCTTGTTGTGTAGCAGTCTGAGTCTCTTCCACCTAGTTTTTAAGGGGCGGGTAGTATTTGGGTGTTGCCGTCGACCTCGACAAAGAGTCCAGTGGCAAAAAAAATCGGATTATTTTCATTCAAAAACCGCCTGGGCTTGTGTCTCTCACCACCgaaagggatctgaatacttcaACTATGGGAGTCGAAGGCTGCACTAAATGTATCAAATACATGCTTTTCTTCTTCAACTTCATCTTCTGGCTCGCAGGAGGTGTGGTCCTGGGCGTGGCTCTGTGGCTTCGACATGACGGCCACACCAGCAGCCTGCTAGAGTTGAAGTTTGACGGCCATCAAGCACCAACCACCTTCTTAAACAGTGTTCACATCCTGATCGCTGTTGGCGCAGTGATGATGGTTGTCGGGTTCCTCGGCTGCTATGGTGCCATTCAAGAGTCTCAGTGTCTTCTTGGAACATTCTTTGCCTGCTTGGTGATCCTGTTCGCTTGTGAGGTGGCAGCTGGAATCTTTGGATTCATGCACAAAGATTCGATTTCCAAAGAGCTGATTACCTTCTATGACAATGTGTACGAGAACTCTGTAGCAACCACTTTAACAGACCAGGACAAGAAACAGGCTGCCACTGCTGTGCTGAAGGCCTTCCATGAGACGTTGGAATGCTGTGGTAGGGGCATCAGCAACCCGTTCACTACGTTAATCACCCAAGGTTTAACGGACATCTGCCCCAAGTCAGTCTCTGCTTCCACTACAGACTGTCATGGAAAAATCAGGGAGCTCTTTAACGAGAAGGTTTACCTGATTGGCATCGCTGCCCTGATAGTTGCTATTATTATGATCTTTGAGATGACCTTTAGTATGGTCCTGTGCTGTGGGATCCGCAACAGCCCGGTGTACTAAAGTCCAGAGGAAAGAAGCAAGGGCTAGTGACCTCTGGAGATACTAGCCAATGACTGAAGGAAAATATTTATCTTCCTTTTTTGTTTTTATAGCCTGTCACTTCCTCAAATAGTTGCTTGCCAATTTTGCCAGTTGTACAAGATCAAAAATGCATCTTCTCACACAGTTTTTGATAATGCAGTACCAACTATTCTTGTCTGTCACCGATCGCTGTTCAGTATTTTGACTAATGTTAGTCTGTACAAAATGTTGAGGTTTACATTGGCATGgcatttaaacacacacacacacacacacacacacacacaattacagaTCCTGGAATTATCTTGTTTTAATTGTAAAGTATTGCTACTTTGCTGGAGGAGTCCAAAACATTGTACTCTGTTGATTTATCaatcttttttcaaatgtatatgtataaactgtatatATTTGCAGTGCTTTATGACTGGCAAGCATGGATATTGTATTGAATCCCTTCTCCCCACAAGTTTCTGCACTCACTGCTTGTCTGCCTGAGTTTTCTCCATAGACAACAACCACTAAGAAACAGTGAATGGATACTATTGATTTGTCTGTTCCATCTAAAACAAAGATAATAGAGGTGATAGTTTCCCCTGTGCTTTTATAACACCTACCAATCCAAGCCATAAAGAGACCCCATGCCTCCGAGCCTTATGAGTGGAATGTCCCATCCTCCCCAACAACACCTTGTTCCTGTAAAACTACATTGAATGTCCTGTCCTTAACCTATTGCTGTGTACTATGCATACCTACAGAAGCCTCACCTCCTAGGCTGGCGCAGCGGACAAACGCAGTGCTGAGGCGCCACTACAGCATGGGGTTTGATCCCAgacacaaccggccgtgaccgggagccCAATAGGAtggcgcgcaattggcccagtgcCGTCTGGGGTAGGGGAAGATTTGGCTGGTGGGGCTTTCCTTGGCTCATCTTGCTATAGCGACTCCTTGTGACAGGTCTGGACGCCTGTAAGCTGACTCCAATCATCAGTTGAACAgtatttcctctgacacattggtgcagcagACATCTGGGTTAAGAGAGCAGTGTAATAAGAAGTAGGctggtcatgtttcggaggacgcatgactcaaccttcaCATCTCCCGAGCCCGTTGCAGAGATGAGCCAAGGGACCTAATACGGGGTAAAAAGAAATACGCTGGACCTGGTTAGTACTTGGtcgggagaccgcctgggaataccaggtgccataaacgcaaaaaaatatttaagaaaaacaaaaaaaagtcacCTTCAGCCATTCATACAAATCTAGTTTATTTTCAAATAATCATTTTTATGCCTGCTTGTTATACTGACAGTCAAACATCTTATTATGCTGGGACATGCCGGACAATGTTGTATCTGTGCTGTATGAcgatactgtataataccactgACCATACAGTTGTGagaggttgtgtttgtgtgtcaggaaGTCAAATACTAGCCATGTCAACAAGTCAAGTCCACGACCAACCCACCACTAGGGGGCAGACCTGTTGTGAAGCTTCATGGTATTCCATTGCTATGGTTCCAAAGCCAGGGGGAGCTCTTTTCATACATTCTTGCTCCACTTTGACTTTGGTTGCCTGCTCAACTGCAAAGCACTTCTTACTGGTTCCATTTCGATCTTCAGCTTCCCCATTTCGATCTTCAGAGTTCACAGATTTGAATCTGATCCATTAGAGGGTGAGGTGGAGCTATCACCCTATTATCTACACCCATCCAGTCCTTTCAGATCTGTTAACACGGAAGGGGTATGGGCTAGGGACTGAAATGGAACCAGGCCCTTAACATTCACCTATATACACACATAAGCACTTAAACACTCACACATACTCACTCCATCATTTGTGTAGTCCTACATAATAGACTGTATGGCTTTCTAAGCCAACCAAAACCTTGTCTTGTTAACACATAATGCCTATGCTGATATATGGTTAAGTGTCTTGTATCATGTACAGCTATATATTATTGTACTAATGACCATGTAAAGACAATGTAGCTATGCCTTTCATTGTGATATTTTGTCTGGTACGTTGTCAAAAGAAAAATGGGTGTCGGCTTCAGTGGCAGTGTGCTGTACTGAGAAATCAATTGAGTTACTAATGGTTGGGAAGATTAGCAACATGGCTGTATATGCTGTACAACACAAAGGTGTACAACACAAAGGTGAAAGAACAATGCCAGCAAAAGAGTGTCTCTTTTTAGTATCTATGTCACTGCCCTACTGTAAAAACACTACACAATGTAGTGACTGAGACTGAGCCCACTGCCACTCAAATCTGTGCCCTTTCTCCTGTTTTAGATTTTGGTTTTGTTGCCCAAGTATTAAGggattaaatgtattttacaagTAA

Function

GO: NA

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613779 lncRNA upstream 71931 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 72929 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 96669 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 97209 71976616 ~ 71976941 (+) True G542010
TU613758 lncRNA upstream 98632 71975196 ~ 71975518 (+) True G542009
TU613861 lncRNA downstream 43271 72141516 ~ 72142559 (+) True G542092
TU613914 lncRNA downstream 176071 72274316 ~ 72292811 (+) True G542137
TU613943 lncRNA downstream 198499 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 243667 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 246692 72344937 ~ 72345730 (+) True G542179
XM_021607530.2 mRNA upstream 52275 72011095 ~ 72021875 (+) True LOC110526507
XR_005052233.1 mRNA upstream 106348 71961924 ~ 71967802 (+) False LOC118964930
XM_021607510.2 mRNA upstream 383790 71681601 ~ 71690360 (+) True LOC110526495
XM_021604957.2 mRNA upstream 1452640 70615492 ~ 70621510 (+) False cmc2
XM_021607537.2 mRNA downstream 19493 72117738 ~ 72135463 (+) False LOC110526510
XM_021607536.2 mRNA downstream 20261 72118506 ~ 72135463 (+) False LOC110526510
XM_021607538.2 mRNA downstream 20264 72118509 ~ 72135463 (+) True LOC110526510
XM_021607549.2 mRNA downstream 58945 72157190 ~ 72181309 (+) False LOC110526514
XM_021607551.2 mRNA downstream 58945 72157190 ~ 72181309 (+) False LOC110526514
TU613619 other upstream 269688 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1452676 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 1452676 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1520230 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1589782 70481950 ~ 70484368 (+) True G540179
TU613820 other downstream 3135 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 52775 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 567215 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 667436 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 940376 73038621 ~ 73145347 (+) True LOC110526543

Expression Profile