RNA id: XM_021607537.2


Basic Information

Item Value
RNA id XM_021607537.2
length 2788
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110526510
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72117738 ~ 72135463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTCCTTAGTCTAAAACCACCACCTCCCTAAAAGAGAACAGACGGACTAGAGCTAACTGTAGGTAGAAGGAATACGGAAAGAagacagaaaatatttaaaacacTCTGGCAAAGGCTCCTTAAACCTATTATGATGCCCAACACCGCGGTCACCACTTATGCAGTCCCGTCCGATGTGCAGTTGGGACCGAGGGGTTCCATAATGGACGAGGTGGAAAGGGCTAAGAGGGTTCAACAACAAGTCAATTTGCGCCTCGCCGAAAAGAAGTATTCTACCCTCACACGGCTGAACTGCTCGAACTGCATTTCCCCAGACCATGGTGGCACAATGAGATTTAACACGTACAACCCCGGATTCAGCTCTAAGTCAATGGTGTATAACACAGGGAGCAGGACCATGAAGATGCCCCCGGTATCCCAGCAGTACTTGGGAGGTGGGTACTCGTCTTGCTCAGCGGTGGAGTTAGGACCTAGATATAGAATCAGCCAGCCTCCAGTCAACATTGGCTACCTCCACCATGACGACATCCAGCTGGGTGGCTACCAGACCAGCCGGACGAGGACCGCCAGGTCCAGATCAGTTTGTCAGGTGTCTGGCGGGGGCAGTGGCAGTGTGTGCGGAGGCTGGGGTCAGTACCAGAACTCCCTGCACAGTTTAGACATGCCCACCGCGGTCAACTATCTCTTCATGTCCGACACAGCCATGCAGGTGCTGGGAGCAGCCTACATCCAGCACCAATGTTACCATAGCAGTGATGCCAAGAACCAGGTGCGTCTGCTGAAGGGTGTCCCAGCCCTGGTGCAGCTCTTCAGCAGTGACAGCCAGGAGGTCCAGTGCTATGCTACAGGCGCTACACGCAACCTCATCTATGAGAACATGGACAACAAGGCGGCCCTCATTGAGGCCGAGGGAATAACCAAGCTCATCAGTGTCCTAAACGAACCAGATGAGGAGCTTCACAAGAACATCACTGGTATTCTGTGGAACATGTCCTCTAAGGAGAGTCTGAAGGAGAAGTTGGCCAGAGAGACATTGAGTGAGCTCACAGAGAGGGTGCTGGTGCCCCTGTGCAGTGGTGGAGATCCAGAGCTGATCCGTCAGAGTCCATCTGAGGCAGACATCTTCTACAACACCACAGGCTGCCTGAGGAACCTGAGCACAGTGAATGAGAGGACGAGGCAGCAGATGAGAGACATGCGAGGGCTGGTGGACTCGCTGGTGGCCTACATCCAGAACTCCCTTCAGGATGAGAAATCAGAGGACAAAGGTGTAGAGAATGCAGTGTGTGTCCTGAGTAACCTGTCTTATCAGCTGTACAGTGAGATCCCTCCCTCAACCCTACTGCGACTGGAGGGGCCTACGTGGGCCAGAGCCACTACTGGGACTGAGTCCATTGGCTGTTTCACCCCACAGAGCAAGAAGGCAAAAGAGCGACGGAACCAGGAACTGTCCACCTCAGAGGTGGCTAAGCAGCCGAAGGGGGCGGAGTGGCTGTGGCACCCCCAGGTGGTGGGGCTGTATAACCGCGTGCTTCAGCACTATGAGACCAACACGGCAACACGAGAGGCTGCAGCAGGGGCCCTGCAGAACATCACAGCCGGAGAGACCAGGTGGGCGTCAGTGCTGAGTTGGGTGGCTTTAGAGCAGGAGCGGATGCTGCCTGTGGTGCTGGACCTCCTGCAGACACAAAGCGACCAGGAGATGTGTTCCCTCACTGGCCTCCTGAGGAACCTGTCCCGAGACAGCAGAAACAAGAACGACATGTCTACGAAGGTAGTGAACGTTCTGGTGACCAAGCTCCCCAGTGATGGCCACCAGAAGGAACCCTCAGGTGAAGTGGTGGTCAACATATGTGGGATCCTCAACAACCTGGTTGCAGGCAGCTCACTAGCAGCGAGAGACATCACCTTCTTTGATGGACTCCCCAAACTTTTTGCAATCAAGTCTTCCCACAATAGCAGCTCAGGGAAGCTGAAGGCTGCCAAGGCTGCTTCCACAGTACTCTTCAACATGTTCCAGTACAGCAAGCTGCATAAAGATTATAAACAGAAAGGGTTCACAAAGTGTCACTTCACCGACACGGCCATTTAGAACAGACGGCTTGGCCCGTTGACTGGATTCATATTCTGGACCTGCTGGTAGAGCCAGCAGGAGGACCCCCACAATGAACCTGACACATCTGGTCTCAAATGGATGCGTTGATGGAACCTGAATAATTCTGAGGAATGTATTTACTGAATGTATTTAAGGACGGAGGAGAAGCAGCTTTTCTTTActcaatatattttttaaattatcacattttattggtcttTCAAAATGGACTGCTTTACCAGCTTAATATTTGTATTGTCATGAGAGTGTGTTGGATGACTGAGGAATCTTCACTTCAGGACGGTGTGTGTGCGTGGTTCATGCctgtgtgcatgcatatgtgtgaATGTTTGCTTAGTGGACTCATCCCGTAAAAGGCATTGGATGCCTCTTTTCATCTCTGGTACCATATGGGCTCAACCTGCCATTCCTGCAAACATACAGTGAATACAACCCTCTAGATGTTATTAGTTCTACAGTACATGGATGCTTCACTGAAAGACAAGATACAGGATGGGTGCCCTCCAAACTCCCATGGTCATGGTGAAACAATGTTTTCCGGTTCCATCCAAGGAGCCTCTTCTGTGTTTATTTTCACCCCAAATAACTAACAATAAACAGCATCTGACATGACCAGACAGTTGTTCCCAGTGTATCCTTTTAGAATGAAAATAAAATTATCATTATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613779 lncRNA upstream 115519 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 116517 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 140257 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 140797 71976616 ~ 71976941 (+) True G542010
TU613758 lncRNA upstream 142220 71975196 ~ 71975518 (+) True G542009
TU613861 lncRNA downstream 6053 72141516 ~ 72142559 (+) True G542092
TU613914 lncRNA downstream 138853 72274316 ~ 72292811 (+) True G542137
TU613943 lncRNA downstream 161281 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 206449 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 209474 72344937 ~ 72345730 (+) True G542179
XM_021607535.2 mRNA upstream 19493 72074150 ~ 72098245 (+) True LOC110526509
XM_021607530.2 mRNA upstream 95863 72011095 ~ 72021875 (+) True LOC110526507
XR_005052233.1 mRNA upstream 149936 71961924 ~ 71967802 (+) False LOC118964930
XM_021607510.2 mRNA upstream 427378 71681601 ~ 71690360 (+) True LOC110526495
XM_021604958.2 mRNA upstream 1496228 70616488 ~ 70621510 (+) False cmc2
XM_021607549.2 mRNA downstream 21727 72157190 ~ 72181309 (+) False LOC110526514
XM_021607551.2 mRNA downstream 21727 72157190 ~ 72181309 (+) False LOC110526514
XM_036980891.1 mRNA downstream 21727 72157190 ~ 72181309 (+) True LOC110526514
XR_005052234.1 mRNA downstream 49609 72185072 ~ 72207042 (+) False LOC110526515
XM_021607552.2 mRNA downstream 49610 72185073 ~ 72207042 (+) True LOC110526515
TU613820 other upstream 15264 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 313276 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1496264 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 1496264 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1563818 70551795 ~ 70553920 (+) True LOC110526485
TU613870 other downstream 15557 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 529997 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 630218 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 903158 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1237342 73372805 ~ 73387687 (+) False LOC100136290

Expression Profile