RNA id: XR_005052234.1


Basic Information

Item Value
RNA id XR_005052234.1
length 5582
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110526515
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72185072 ~ 72207042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAATGCAATCAAACCATCCTTTCTTATTCCAGCCTGAACCACTCCCTAAATCAGTCGATTACAGTATAACAACAATAGCTTTCAGGACAGTAGGCTATATTGAATTTCGCTCTGGTGATCAGTTATGGGGACGCGGCGTGCACCACGCGCAGATAGTGTGCACGAGGCTGTCGCTGACCTTGGTGCTGAACAGCCAGAGGTTCTCGCGACGTCAGAAAAGCTGGCTGTCTCCACATGAGACGCGCAAGCCCAGCTCTGTGGTTTATAGAAGCAACTCCACACACCGCCAGTTCCCGCTTTTGctgattgtttttttgtttaaaatTATATGGTTATCACCGTAGACGCTTCTAACGTTTTTCTCTTTCGTTCGCTTTAGGAATTATCTGTAGATTTTCATCACGATGGCATTGCATGCACTTGTACGTGAGGCGAACGATGAGTATGTAATGGTGAATGGGGAATCAGGGCTCATCTGATTTCTCTCATATGTAGGCGTTTTACAGCGATCGACGCGTGATAGGCTACAGATCTTGTCTGCTTTTCTTATCAAATAATAATATACATCGCTTGCTTCACGGGTTTGTTCGGTCACATTGTACCGTAACATGAAGCTTAAACAATAGACATTTTTGAgaaaaacattacatttggaTATGGAGTCCGTCAAGATGAGAGCCAAAGAGGGGATAAAGGAATTTGGGGCGAAGACCCTGGGGCAGATGTACAAGGTGATGGAGAAGCGACAGGGAACTGGTGAAGTTATCGAACTAACAGAGGACGGCAGGCCCTCTGAGGCCCAGGAGAAGAAAGCACCTCTGTGCGACTGCACGTGTTTTGGGCTGCCCCGCCGATATATCATCGCCATCATGAGCGGTCTAGGCTTCTGTATATCCTTCGGCATCCGATGCAATCTGGGCGTGGCCATCGTGGGAATGGTCAACAACAGCACTATTCACAAAGATGGGAAGATCATCATCACAGAGAAAGCGAAGTTCAACTGGGACCCAGAGACAGTCGGTATGATCCATGGTTCGTTTTTCTGGGGCTATATAGTGACGCAGATCCCGGGAGGGTACATATGCTCGAGACTGGCAGCTAACAGGGTTTTCGGTCTAGCCATTTTCCTTACCTCGACGCTCAATATGTTAATCCCCTCCGCGGCACGGACGCATTATGGACTGGTCATCTTTGTGAGGATATTGCAAGGGCTGGTGGAGGGAGTGACCTACCCAGCCTGCCATGGGATCTGGAGTAAGTGGGCTCCTCCTCTGGAGAGAAGTCGCCTGGCAACCACCTCATTCTGTGGTTCCTATGCTGGTGCTGTCATTGCCATGCCTCTAGCAGGGATCCTGGTGCAGTACTCGGGCTGGTCCTCTGTGTTCTATCTCTATGGGTGCTTTGGGATCTTCTGGTATATGTTCTGGATCCTTGTGTCGTATGAAAGTCCTGCTGTGCACCCTACCATCACCCAGGAGGAACGAGTCTACATAGAGGAGAGCATCGGGGAGAGTGCCAAGCTCATGGGCCCTGCTGAGAAATTTAAGACCCCCTGGAAAAAGTTCTTCACCTCCATGCCTGTCTATGCAATCATCGTGGCCAACTTCTGCAGAAGCTGGACCTTCTACCTACTgcttattagtcagccggcctaCTTTGAGGAGGTGTTTGGGTTTGAGATAAGCAAGGTTGGCATGGTGTCTGCCCTGCCCCACTTGGTGATGACAATCATTGTGCCCATTGGAGGGCAGTTGGCTGACTACCTACGCAGCAGGAACATCCTGTCTACCACTACAGTTAGGAAGATCATGAACTGTGGAGGGTTTGGCATGGAGGCTACGCTGCTGCTGGTAGTGGGATTTTCCCACACAAAAGGGGTGGCTATTTCCTTCCTGGTCCTTGCTGTGGGCTTCAGTGGATTTGCCATATCAGGATTCAACGTCAATCACTTAGACATTGCTCCACGCTATGCCAGTATCCTTATGGGCATATCCAACGGTGTGGGCACCCTGTCTGGCATGGTATGCCCATTGATCGTAGGTGCCATGACAAAAAACAAGACTCGAGAAGAGTGGCAGTGGGTGTTCCTCATCGCTGCTCTGGTTCACTACGGGGGAGTCATCTTCTATGGCATCTTTGCCTCTGGAGAGAAGCAGCCGTGGGCCGACCCAGAGCTGACCAGCGATGAGAAGTGTGGCTTCATCGATGAGGATGAGCTGGCAGAGGAGACGGGCGACATCACCCAGAGTTACAGTGCCCTGGGCGGCGGTCCGACCAAAACGTATGGTGCCACTACGCAGAACGGGGGCTGGGCTGACAGCTGGGATAAGAAGGAGGAGTTTGTCCaggaagaggcagagggagggccGTATGGCTACAGGCAGGACCAGGACTACTCCTAGAGACAGCAGACACAATGACCATCAAACGGTAGACTTATTTTGTAGTGTTTACCAGTTTAGACGAAACAAGTCAAAAATATGTTTGCACAAATTCAAATCATTATTTCAAAATATAAAATTAGTTCAAAACAGGATTTTATTGTGCAAATAAAAATATTACTATAGAGATGTAACACATATCAAATTGGCAGATCTATTTGTAAACGTAATATGCATATAAATTATAGATATATTTATTTGGAGTGCAATTGTGTGTAAGTGTGAACCATTTCCACCTCATCAATCTGtgcttcttcattctggagatgCCTGTTATGTACGATCAGACAAGATTTAACTGGCTTCCTGGATCATCATGCCTAACTGGTTCTTATTACAACTCCTCATGAGCCAGCCATTGCAGTGTAAAAGAAACATGTCACTGGTAAAAGGGGACTTAACCAGGAATGAGACTGTATGTCTTAGGTTGTACAGTATCTCTTCTGAATGCACTGAAAGTAGTGTGTCCTTTTAATGCACAATATCATTTTcttttcttattattattggtttgTTAAACTGTGTCTTTAACACAAAAAGGCATAAAAATACAATAATGTTTTGAAGAACGACATAACACTTTCGCCAGCTGATGTAAAAGTCTTAAGATGCATGAAAGAAGAATAATGACGAAGCGTTGCTCACGTGTTTACTGTGCCATTTTGAGAGCTTGGGACTATACGGTTCTATCTGCATTTTCAGAGCTTGGGACTATACGGTTCTATCTGCATTTTCAGAGCTTGGGACTATACGGTTCTATCTGCATTTCTTTCAAAATGAAGTTAGtgacatagccttgttctgttcaatgttctcttcCTATGTACCCCAATTCAAGTtgttaagttcaaaagaatacaagATATAAAATagctgacaccattcaaaccaatgagggtttGGAACTTTgaagccaattatctcagaatcatcttCTTACAGATTGAACCTTGTAGTCCCAAGCTCTCTATTTCATGCCTATAACAATGTTACATCTGTTGTTAAAAGTGTACGTTTGGAGGTTACAAACATTCATAACTCAGTTATGTAATTATTATGATCATTATGTCAGTTAAATTGTGTGGTCAATTCAAGTCATTTCAAGGCATTTCAATGAGCTTTGTTGTTGTTTAAAGGTAAATGTTTGTCTGAGGTGACTAAAGAAAAATAACTATGATGTATAAGAGCACATGGACAATATAACCAAATGCTGGCCGGCACTATCAAGGGCCTGTGCAATGCAGCGAAAGACCAGCCAGCCGATCCAGAAGTAGCCAATCAGTATATCTACTGTACAGACAGTCCGTCAGCAGGAGATATGTTTTGCTAATGAAAAGGAAACATTTTTAGACTGGGATAGTGACCCAGATAGACAATGTTGTTAAAGAAAACTATACCTTACCAGTCCAGGAGGACAATTAGCCAAGTTGGGGATTGAGATTCATATTACATATACTTGTAAAAACATTAGAGCATTACTGAATAAAAAAACATGACAGTATAGCTGTTACTGCCTATGTAATGTATGTCACATTGAACGTTTACCATTCCTTAAAGAGTAGGTAGACAATCAAAAGAGCAGCAAGACATGATTTAGCCAGTGTGTATAGAGTGGGAATGACCAGTGTAGAGATACTGGGTTCCAgtcaatgatttatatatacactagatgactgacaaGGGCCTTGTTTAGAAGCCGCcgcgcctccatcttggcactccccaacaatgtaaataaatattttggaagctataaaaatgcatttattaatgcctacatttgtttttgccatgtttattctattacagaaACTTTAATGCATACTGTTAAAtgatattatgtgagctaaacattccaaaaaatacatgtaaaatgttTTCCTTAAAAGTATAAGTTACTGTCCCCAGtacaaaaaaactacttaaatacatgtaattttggcCTATAAAACATTTAATTGTAATACTATAGAATTCCATTAATTCcaatggaggactgctcctactgggaAGTGCCAATATGgctgaccggtggcttcaaagcctctcattgaCCAGTAGATaacatcagcaatccagggtttatatacatcattggtttCAGTAGCGTGTCAGGGACCTAAACCTgcttttcactgtctgtctgtggagaCCAAAAGTCAGCACTTCACAATGTATTTATGGAAATGTATTTATGCATGGAACAAAGCCGTAGTCTGAATGTTCTtactttttatttctttcacaaaatgtattttgtctCTCAAACTGTTACTAATGTGTCAATTTCTTTGCACAATTTACCAAAGGTAACGTGTCAAGCTGGGTTTGAACAGGAGGGCTATATACTAAAGGAATTGCTGGACATTGCAGTGAAGGCCTCTGTAGGCCTCTCCAGGTGGCGCTAACCATACTCAGTGTACAAAGCAATAAATCCATGGTAACAGTTGTTGTCAACCATTGAAAAATGTAAAACACTAGCATATGTAACTAGAGCGTTACTTTTACGTTTCAAGCTGTGTTTTTTGTGATATCAAATATAGAAAAGAACAAACACAAGTACTTGTAAAAATATAAAACCTATGTAGTTAGAGTCCTCCACACAGCTCTTTGACATGCTGATAATGCAGGGAGTTTGTGAGGGGACTGCTCACCAGAAGAGAATGATACCCTGGGCCATTCCTGTGACATGGATGATGTCTATCTCCATATCTCTATGGTTCCACTCCTGTTGGTGTCTGCGCATCCGTTGTTGTTCTGTACAGTTTTCAGTGGTCGTTTTGGAGGGTGTGCTATTGTtcagttttttctctctctctaaaccctgTTGGTTTGATTGATGTGTGTTCTGTCAGTGGCTGGACCCCTATTGCCCCCTTAACCATCTGTCTCTAACTACCTAAACCCCTTTCATTGTTGCAATATTCAATGATGTGAAGGTTGTCTGTAAAGGTGATCTAACATTTACAGAAATGGTAGATGTATAACATGAAGTAACGGTACCTTCTTCCTGTTTTGTGCCTCTGAGTGAAGTTACAGTGTGATTCTATGGCTTATTTTGCTGTGTCAATGGAGAAATTTGTTGATGTCAAAATGAAATGCTCTATATATCCATTttataaaaaaacaaatgaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613861 lncRNA upstream 42513 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 182853 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 183851 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 207591 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 208131 71976616 ~ 71976941 (+) True G542010
TU613914 lncRNA downstream 67274 72274316 ~ 72292811 (+) True G542137
TU613943 lncRNA downstream 89702 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 134870 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 137895 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 139785 72346827 ~ 72347198 (+) True G542180
XM_021607549.2 mRNA upstream 3763 72157190 ~ 72181309 (+) False LOC110526514
XM_021607551.2 mRNA upstream 3763 72157190 ~ 72181309 (+) False LOC110526514
XM_036980891.1 mRNA upstream 3763 72157190 ~ 72181309 (+) True LOC110526514
XM_021607537.2 mRNA upstream 49609 72117738 ~ 72135463 (+) False LOC110526510
XM_021607536.2 mRNA upstream 49609 72118506 ~ 72135463 (+) False LOC110526510
XM_036980893.1 mRNA downstream 14306 72221348 ~ 72244464 (+) False LOC110526517
XM_036980892.1 mRNA downstream 14307 72221349 ~ 72244464 (+) True LOC110526517
XM_036979109.1 mRNA downstream 79989 72287031 ~ 72294897 (+) False LOC100136249
NM_001124513.1 mRNA downstream 80018 72287060 ~ 72293904 (+) True LOC100136249
XM_036980894.1 mRNA downstream 90951 72297993 ~ 72339964 (+) False mybpc3
TU613870 other upstream 32678 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 82598 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 380610 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1563598 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 458418 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 558639 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 831579 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1165763 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 2080736 74287778 ~ 74288138 (+) True G544565

Expression Profile