RNA id: XM_036979109.1


Basic Information

Item Value
RNA id XM_036979109.1
length 2258
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC100136249
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72287031 ~ 72294897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCACCAATGACCAGGAACCGCCACCAGACACACTGAGATGTGTACACCCACAAAGATATACAGAAGTCAAAATATCAGGTTCCCTTTTAATTTTCAGTCACTGAGTAGggctaatttattttattttcatagaCAAAATTTGAGAGAATAGCTTGGCTTACAAGTGGATAAAGTTGTGTAGGCAGAGAGAGACATTTTGGGTTTCGTTTGGTGAGAGGAAATTTGGTAAACGTTGTGCAATGGTGCGGGAAAAGTTTTGAAAGAGTGTGAGAAACAATTGAAGCTAAGTGCCTGAAGTAGGTCAGTTCAAGAAGAAGCCTTCATGTTGCATCCGTACAGAATGGAGGGGTACCTCATCTCACCTGGTCCTGCATCAGAAGACATATACGAACCCGACATCTATAGACAACAGATGTCAGAATATTCATATCCCTATGTCATCGATGCAGAGAGTCAAGGAGAACACTGGGACTATCACGCCACTCATCATGTTCATCCTCTGGACTTTGACAACCTCCAAGAGGGCCACTTCACTGAGCTCCAGAGTGTCCAGCAACTACATCTACCCAGTATGGCTCGTTACAGCGATGTTGACACTCTCTCTCTGGACCCTGGCCTTGGGGGACACAACCATGCCCTACCCCCACCGTTTGTTGTGTCCAAGGTGTCATATTACCCTCGTGCCATGGGCTACTTGCACCCCTCTCCTCAGACGATGAGGAGCTCAGACGACGAGGAGCCAGGAGGCCGCAGCCCTCCACTAGAAGTGTCTGATGAAGAGTGTCTGAGAGACCACATTGCCCAAGTAACAAGGGGAGAATTGGGCAACAAGAAGAAGATCCGTCTGTACCAGTTCCTGCTGGATCTGCTGAGGAATGGGGACATGAAGGACAGTATCTGGTGGGTGGACAGGGACAAGGGCACCTTCCAGTTCTCCTCGAAACACAAGGAGGCACTGGCACATCGGTGGGGCGTACAGAAGGGCAACCGCAAGAAAATGACCTACCAGAAGATGGCACGGGCTCTTCGCAACTACGGCAAGACAGGCGAGGTCAAAAAGGTCAAGAAGAAGCTGACTTATCAGTTCAGTGGTGAAGTGCTAGGGGGGAGGTCTCACTTGGAGAGGAGGCCATATTCCCATTTGTAGAGGGAGAAACATAGTGGAAGTCCTGAAGaagggtagagtgagagagagatagttaaCTGTATATAGTATGCAAGATGGTTATCAATGTAATAAATATTGATTGTGTTCAAATCAACAATAACTGTTTTTGCTGCTCTTGTAAAAAGCATTTATGTGAACGTCAAAGCCAATGTCTTAATGGAATCTGACAATTAGCAAGTTTTGCTCCTACAACTCAATAATTGCACAATCACATCTGGACCTTTTACATTCTATAGCATGTAGAAACAGGACCGTTTCAAATGATACTGTCAATCATTATCACCAGAAGGCTTACAGGAGTGGTAATACAGATGACCACTAGAAGTCCTCAGAGATCTCCTTTCTTAAAGCTGGCTGTTTTCACTGACTTCTACGCACTGTTGGACTCACTGACCATTGTGCACATTTGACATTGATTAGACTTGGATGcaatgtaaacaaacaaaaatactaTGATAAAGAACTCTTTAGCATTAATGAAATTGATTTGACACTCTGAGATGCACTGACGTTGGATATGCAATTCCTATTGCTTAACCTTTGGTGTAgcagcacacaaacacaacatATTATACATTAGCTTTTGCTAATCAGAATTGAGAATTCAGCCAAGCCGTGGTATAAAGCTTGTATATTTGATTGATGGTATTATATGTGTATTACATACTAACTCATGTTAGCTCAAGACTTTGGGAAGGAAACCCTTCTGAACATTGGGTGGTTTAACCTGCAAACTTTTTGGACTGTCCCCTTGACCATTACTTCCCTGTAACAACCCATTGACTTGTTCCTGAAAGGAAAGAGGGTGAAGAGGCTTGTCACCCAGCCCTTATCATCTGCTTGTGCTCTGAGATATAGCACAGACCCTTGCCTCCTCCGAGCTAGGGTGCAATCTATTCCTAGCCTAGGAATACCAACACAGGGATATTTCTCCCATGCTCTCAATCATAGACCCCTGTTTAAACTGTGTGAAAGTGTATATGATAAGGTTGTTCTCCGTACTCTATGTGCTCTCTGTATAACACATGTTGGCATGTTTGTATGTTGGCATGACTCAATTACATATCTGCACGTGGTGAACTCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613861 lncRNA upstream 144472 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 284812 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 285810 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 309550 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 310090 71976616 ~ 71976941 (+) True G542010
TU613943 lncRNA downstream 1847 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 47015 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 50040 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 51930 72346827 ~ 72347198 (+) True G542180
TU613962 lncRNA downstream 52553 72347450 ~ 72348095 (+) True G542181
XM_036980893.1 mRNA upstream 42567 72221348 ~ 72244464 (+) False LOC110526517
XM_036980892.1 mRNA upstream 42567 72221349 ~ 72244464 (+) True LOC110526517
XR_005052234.1 mRNA upstream 79989 72185072 ~ 72207042 (+) False LOC110526515
XM_021607552.2 mRNA upstream 79989 72185073 ~ 72207042 (+) True LOC110526515
XM_021607549.2 mRNA upstream 105722 72157190 ~ 72181309 (+) False LOC110526514
XM_036980894.1 mRNA downstream 3096 72297993 ~ 72339964 (+) False mybpc3
XM_036980896.1 mRNA downstream 3096 72297993 ~ 72339964 (+) False mybpc3
XM_036980897.1 mRNA downstream 3096 72297993 ~ 72339964 (+) False mybpc3
XM_036980901.1 mRNA downstream 3096 72297993 ~ 72339964 (+) False mybpc3
XM_036980902.1 mRNA downstream 3096 72297993 ~ 72339964 (+) False mybpc3
TU613870 other upstream 134637 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 184557 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 482569 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1665557 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 370563 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 470784 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 743724 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1077908 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1992881 74287778 ~ 74288138 (+) True G544565

Expression Profile