RNA id: XM_036980902.1


Basic Information

Item Value
RNA id XM_036980902.1
length 4168
RNA type mRNA
GC content 0.50
exon number 33
gene id mybpc3
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72297993 ~ 72339964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGCACGTCTATTATCTCATTGCCGGACAGAAAGGGGATTGGGTCTAGACATCATGACAAAAGAGGTTGGGTTAGTGCTGTTGTGAAGGGGGGTTGCTCAGGAGCCCCACTATTAAACGCAAGTGGTGAGCTAGGAAGGAGCCTGTTATTTATTGTTGGTTACTTTCTGGAAGACACATTCAATCAGGATGCCAGAGCCGGTCAAAAAAACAGAGGAAGCCCAGGGTGGAGCAGGGGACCCAGCAGCTTCAGAGCCAGCTGCTACAGACACTTTAGCTCCAGCGGAGGCCCCAACCCCAGCAGAGAACCCTGCAGCAGCGGACACTACACCAGCAGCACCTCAGCCAGAAAGTCAAGCCCCTGACATGAAGACAGACCTCACTGGCCTGTTTACAGAGAAACCCCAGAGTGGGGAGGTCACTGTGGGTGAGAACATCAATTTTGTGGCTAAAGTGAATGCTGCTTCACTGCTGAAGAAGCCCACcatcaagtggtttaaggggaagtGGATGGACCTGGCTAGCAAGTCTGGAAAGAACCTGCAGCTCAAGGAGCTTTATGATCGTAACTCTAAGGTCTACACCTTTGAGATGCAGATCATTGCAGCCAAGCCCAGCTTCGCTGGAGCTTACAGGTGTGAGGTGTCATCCCGGGACAAGTTTGACAGCTGCAACTTTGACCTAACTGTGCATGAGGCCCGGGCTGTGGAAGGGTTTGACATCAGGGCAGCTTTCAGGCGCACCAGTATGGATGGAAGCGAGGAAGCAGGAGAGTTGGACTTCAGTGCCTTGTTGAAGAAAAGAGACAGTTGTTTTAAAGGTTCACCAGGTCATCGTGCCTCTAAGTCCCAGGTCAAAAATGAGCCTGATGAGGATGTATGGGAAATCCTCCAGAAGGCTCCAGCCAGTGAGTATGAGAAGATTGCCTTCCAGTATGGCATAACAGACCTGCGTGGGATGTTGAAGAGGCTgaagaagatgaagaaggaggaAAAGAAGAGTGAAGTTTTCCTAAAGAAGCTGGACCCTGCCTACCAGGTAGAAAAAGGGCATAAAATGAAACTATGCATTGAGGTGGCCAATGAAGACGTAGATGTAAAATGGCTGAAGAATGGGCAAGAGATTCAATCAACTGGAAGCAAGTACATCTTTGAGAGTGTTGGCAACAAGCGATACCTCACCATCAACCACTGCTCACTGTCAGACGATGCCACATACACTTGTGTGGTCGGAGATGAGAAGTGCACCACAGAGCTCTTTGTCAAAGaGCCTCCTGTCACTATTACAAGTCATCTGGAGGACCAGATGGTCATGAAGGGTGAGCGGGTGGAGTTAGAGTGTGAGGTGTCAGAAGAAGGGGCTACTGTCAAATGGGAGAAAGATGGTGTGGAGCTGACAAGGGATGAGTCCTTCAAGTACCGCTTCAAGAAAGATGGCCGCAAGCACGTCCTCATCATTAATGAGGCAACTAAGGAGGACTGTGGCCACTACACAGTTAAAACCAATGGCGGTGAATCTATGTCTGAACTCATGGTGTCGGAGAAGGAACTggaggtgtaccaaaacattgcTGACCTCACGGTGAAGGCAAAGGATGAGGCTGTGTTTAAATGTGAGGTCTCAGATGAGACTGTGAAGGGtatctggtacaagaacggagTGGAAGTGAAGGCTGATGCCAGGACCAATATTACACACATTGGCAGGATCCACAAACTCACTATCGATGATGTCAAACCTGAGGACCAGGGTGACTACACCTTTGTTCCAGAGGGATACGCATTCAACCTCTCAGCCAAACTCAACTTCCTGGAGGTCAAGATCGATTATGTGCCTCGCCAAGATCCTCCAAAGATCCACCTTGACTGCATGGGTCACACGTCCGACTCCACCATAATGGTAGTGGCTGGGAACAAGCTGCGACTGGACGTGCCCATCACTGGAGACCCAGCGCCTACTGTGGTCTGGACAAAGGGAGAAAAGGCTGGCTCTGAGGTGGCGGCAGAAACATGGAGCATCAAGGATGGGGATGTgatgacagagggagatggaaggCTCCACGTGGAGAGCACCAAGGGACACTGTATCTTCACTATTGAGGGAGCGGATAAACAGGACGAGGGCCTCTACTCTGTGATTGTGCGGAACCCTGCTGGGGAGGACAAAGCTGACATTAACGTCAAAGTTGTTGATGCGCCAGACCCTCCCTCGGCCCCAAGGATCCTCAGTGTTGGAGAGGACTCCTGCGTTGTCCAGTGGGACCCCCCTAAGTCAGATGGTGGCAACCCGATCATTGGCTATGTgctggagaggaagaagaagaagagctaCAGGTGGATGAGGCTGAACTTTGACCCCTACACTGATACTACCTATGAGGCCAAGAGGATGATAGAGGGTGTGGAATATGAGATGCGTGTCTATGCAGTGAACGCCATTGGCATGTCATGCCACAGCGCTGCCTCACAACCCTTCATCCCAGTGGccccaacCAGTGAGCCCGTCGGCCTGTGCGTGGATGACATCAGTGACACTACCATCTCACTGAAGTGGAGAACCCCGGAGCATCTGGGTTCGTCTGAGCTGGATGGCTATGGGGTCGAGTACTGCAAGGAGGGCTCTGATGAATGGGTGCCAGCTTTCGAGGGTCTGACAGAGAGGACATCTGTAATCATCCGGGACCTGCCTACCGGGGAGAAGATGCAGTTCCGTGTCAGAGCCTACAACATGGCAGGGCCCAGTGCACCTACCTCCCTAGCACAGGCCGTCACTATCCGCGAGATCATGCAGAAACCCAAAATCTGGATTCCTAGAAATCTCCGCCAGACCCTCATCAAGAAAGTGGAGGAGACAATCAACCTTGTGATCCCTTTCCAGggCAAGCCTAGGCCTGTGATCACCTGGAGTAAAGATGGGGAGCATCTGAACCCGAAGCAGGTCAGCGTCCGAAACAGCGACACCGACACAATCCTGTTCATCCGCAAGTCAGAGAGGAAGGACTCTGGGAAGTATGAAGTCAAGCTGCAGATTGAGAATGTTGAGGACACAGCCAGCATCTCAATTCAAATTGTCGATTTGCCTGGGTCTCCAGAGAAACTGAAGATCATGGATGTTTGGGGCTTCAATGTGGCTCTGGAGTGGAAGCCACCCAAGGACAATGGAAATTGTGAAATAACCGGCTACATGGTTCAGAAGGCTGACAAGAAGACCATGGAATGGTACACTGTCTATGAGCTATATAGGCGAACTAACTGTGTGGTGGCTGATCTCATCATGGGGAATGAATACATCTTCCGTATCTACGCTGTGAACATGGTAGGCCTCAGCCTAGAGCCCTGCTTCTCAGCAGACAGTGCCTACATCCAGAAAACAGGTTTCGAATACAAGCCCCCAACCTACAAGGAGCATGACTTTTCCGAGGCGCCTAAGTTCACACACCCTCTAGTGAGCCGTTCAGTCATAGCAGGCTACAACGCCACCCTCAGCTGCTCCGTCAGAGGCATCCCCAAGcccaaaGTGACATGGTACAAAAACAAGATGGACATCTCCAACGAGGCCAAGTACCGTATGTTCAGTAAGCAGGGCGTACTCACCCTGGAGATCCGCAAGCCCTGCTCATTTGATGGGGGAGTGTACATGTGCAAAGCAGTCAACGCCAGTGGAGAAGACGCAGTGGAGTGCAAGCTGGAGATTCGCCCACCTGGCACTTTCCCCCAAGCTCAAATCACCAAAGAGGAGAGGGATAAGCAGATGAACAAGGCTGATTAGGTGTAAAGAAGCCGGTTGAAGATAGGGTGGATGTCCCGTCTCATCCTACACGGACCTCCACTGGGACCCTGGCCAGACTACAGCTCAATGTGAAGAGACCAGAGATAATCCACTAGCTTTCATTTCCCTGTGTCCCACTACCACCCCGTTATGTGCACATGCCAATCTTCCCGGTTCCCTGTTGTGAAATCATCTTACATAGATCATCCAAGACACTACATTCATCCACATTGtattattgtacctttatttatttCATGGAATAATTTGAGGAGTAGCAAAGGACTGCATTGTTTGATTCACTCTTGCATCCTTAGTAGAAAAAACTTATTGAGTATTAGTGGCAAAGATAATTTGTTTTATGTATGAAAAATAAATGCAAAGCTTTGTCAACGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613943 lncRNA upstream 1004 72296744 ~ 72296989 (+) True G542162
TU613914 lncRNA upstream 5182 72274316 ~ 72292811 (+) True G542137
TU613861 lncRNA upstream 155434 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 295774 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 296772 72001016 ~ 72001221 (+) True G542021
TU613908 lncRNA downstream 1948 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 4973 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 6863 72346827 ~ 72347198 (+) True G542180
TU613962 lncRNA downstream 7486 72347450 ~ 72348095 (+) True G542181
TU613964 lncRNA downstream 10122 72350086 ~ 72350298 (+) True G542183
XM_036979109.1 mRNA upstream 3096 72287031 ~ 72294897 (+) False LOC100136249
NM_001124513.1 mRNA upstream 4089 72287060 ~ 72293904 (+) True LOC100136249
XM_036980893.1 mRNA upstream 53529 72221348 ~ 72244464 (+) False LOC110526517
XM_036980892.1 mRNA upstream 53529 72221349 ~ 72244464 (+) True LOC110526517
XR_005052234.1 mRNA upstream 90951 72185072 ~ 72207042 (+) False LOC110526515
XM_021607561.2 mRNA downstream 230853 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 230853 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 230853 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 230987 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 231665 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 145599 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 195519 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 493531 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1676519 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 325496 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 425717 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 698657 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1032841 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1947814 74287778 ~ 74288138 (+) True G544565

Expression Profile