RNA id: XM_021607562.2


Basic Information

Item Value
RNA id XM_021607562.2
length 3139
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110526523
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72570817 ~ 72595606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAACAATTATAGTCAAAGGTAGGCTGTGGGTGTATTATACTTCGCTCCACAACATAAGTAATGTTTATGATGTATTTTACAACTCGCAGCACTTGCTGTTTTCGCTCGGAGATCAATACACAATAAGAAGAGTCATGGACGTGTGCAGCCATGTCAAAGTGGTTGTTCGTGTGCGGCCAACTAATGACAATGAGAAGTGCGAGAACTTCAGAAATGTGGTCCAAGTTGTGGACAACCACATGCTAATATTTGACCCCAAGGAACAGCAAATGACATCTTTCGGGGAACCAAGAGTTCAAAACAGAGATGTCAACAAGAGAGCCAATAAGGACCTGAAATTTGTCTTTGATAATGTTTTTGGGGAGGATTCTTCTCAGGTGGATATCTTTGAGAACACCACTAAAAGGATACTTGATGGAGTGTTGAATGGCTTTAACTGTACAGTCTTCGCTTATGGCGCAACAGGAGCAGGCAAGACACACACCATGTTGGGCTCAAGCAATGACCCGGGTGTGATGTATCGCACCATGACAGAGCTCTTCAACCGTATGGATCAAGTCAAGGAAGAGAAAATATTCGATGTAGCATTTTCTTATCTTGAGGTCTATAATGAGCAGATCCGGGACCTCTTGGCTAATGTGGGCCCACTTGCAGTGAGGGAGGACCCATCGAATGGAGTGGTTGTCCAAGGCCTTACTCTGCACCAGCCTAAGTCTGCTGAGCACCTCCTTGAAGCTTTGGATTATGGCAATCGGAATAGAACGCAACACCCCACTGACATGAATGCCACCTCGTCACGGTCCCATGCTGTATTTCAGATTTACTTGACGCAACAGGACAGGACGGCCAGCCTTAATCCAAACGTCCGTGTGGCCAAAATGAGCCTGATTGACCTCGCTGGCTCCGAGCGAGCAAATGCCACTAACGCAAAGGGAGCACGTCAACGGGAAGGCGCTAACATCAACCGTTCACTCCTTGCCCTGGGAAATGTCATCAACGCTCTGGCTGACCCTAAGCAGAGTAAGAAAGCCCACATTCCATACAGGGACAGCAAGCTAACACGACTCCTTAAAGATTCTCTTGGCGGGAACTGCAGGACGGTCATGATTGCCAACATTAGCCCCTCCTCCAAATCTTATGACGACACCCACAACACACTGAAATACGCCAACCGGGCCAAAGAGATCAAATCATCGCTCAAGAGGAATGTTGTCAGCTTGGACAGTCACATCGGCCAGTATGCAGTGATATGCGAGAGGCAGCGAGAAGAGATCATTCAGTTGAAGAAGAAGTTGAAAGAGaatgaggagaggaagatggacCCTCTTGTTCCTGGAGTCTCTAATACCATTTCCAGTCAGAACCAAACAGAGATTCACAAGGTGTCAGAGTCCTTACAGAGCATTTTCTCCAGCCGTACTCAGATCAGGAGGGAGCACCTTGTTCTGGAGCGGCAGCTCAAGGAGAACGAGTTACGTCAGCGTCACAGCGAGGAGTGCATCCAGCAGGCCCAGCTCTTCGGTGCCAAAGACAAGACTGAGAAGGCCACCTGCAAGCACGAGCGCAAGCTGGCTTCCCTGCTCACACAGCAGCAGCACATCCGCAAGAGGCTGAAGGAGGTTGAGCTGTGCTTCCTTGAGAATGAGGGCTGGCTGCACCGCGTGGAGAATGACTTGAAGCTACTGGGACAGGACACCCAGCCACAAGTGGTACTCCAGAAGGACCTTCGCTGCCACAGGCTCCAGCTACAGGTAGAGGACCTCAAGCAGCACATTGAGCAAATGACCCACCTCATCGGCATCCAGGACCAGGAGAACAAACAGACTAAAAAAATGGTGCACATGCTGCTGCCTGCCTACAGCAGACAGTACTGGACGCTGAGGGGGTCGGGCCTGGTCACAGCTGCCGACGAGGCTGAGAACCAGGACCTGGAGCACCTGGTCCTCAGGGAGAGGGGTGTGGTGTGGGCCGATCAGGAGAAGGCAGGGGAGCAGAAGGACGAGGAGACCCAGGCTGAGGGTTCCAGGCTTAGGCCAGAGCTCGTACCCATCCTGTCATTTTCACACCTCATCTGTCCCCATCAAAACAGTCCCTGCAGTAGTGCTGAGAAACATAAGAGGAGAGTCTCGCTGCGCCTTCAACCCAATCCATCATCGAAAGGCCCAGCAGCCCAGGTGACAGTGATGGAACCCATTCCCAAGAAACATACCAGGAGGAAGCTGGCAGTGTCTCCACCAAACCCTGGGAGTGTTGCCTCAGCGCAGGCTCCCATGGTCCTCCAGGAGGTTTTAAGACAGGAGGggatgtttccactgctctacACTCCAGATGCCAGTGGTACACTCAACAGGCCTTCACTCCTGCCTCTCCAGCACTATGCAGTCAATGACCCCAACATGACATTTGACATTGAAGATGAAGACAATGAATCAGCTCTTGCCAACGCTACCGTCGTCCTTTACCAATGTAGCCCCAATCATCAAGCGGTGTCTTCGTGCCCCTTGAGTCCAAGCCCACAGCAGGCTCCCCGAGCCAATGACATGAGCAAACCCCCCAAAAGACTGGAGATACCGTCTCTGTTGGACATCCGACATGGCAAGACCTACATGGCCATGACTTCGGCTGCGCAGGGCAAACGCAAAATGAATTGcagcagcagagagCAGGAAATCCTTTCAGCACCCAAGCACATAAAGCAGGACCCCACAGTAGTAGCAAGACCACTAAGAGTGCGTCTTTTTGCTGGGTCAGAGGAGAACAAGCCCAGAAGAGTTATGAGGAGTGTTTCTGAGGGGAATCTTCACCTCATGGATGTTCAGAGGAAAAAGTCCATATTCTATAAAACCTCCCAGAAATTCAAGAGTGTGACAAAGAGGATGTGAGGCCTGCTTTTGACCAGATGTTGCTGATGTCATGTAGAAATTAGGGAATCGTGTTTAGATGTTGAGAGAGAAATTAAATCCTATGGATTTCTTGGATAGTTTTTGCTTGaattgtgtatgattctgaacTTGTTCTTAGTTTTATTTTTGGTTTTAGAATTcgtgtttttacatttttatttcctACATTAACATTTGTTGTACAGATAATTTGCTATTGTTATTTAGTAATAAAATATTTAGTTAACTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614033 lncRNA upstream 115600 72448348 ~ 72455351 (+) False G542250
TU614032 lncRNA upstream 115600 72450591 ~ 72455351 (+) True G542250
TU613983 lncRNA upstream 195351 72375273 ~ 72375600 (+) True G542202
TU613979 lncRNA upstream 202364 72367882 ~ 72368587 (+) True G542198
TU613978 lncRNA upstream 203273 72367322 ~ 72367678 (+) True G542197
TU614600 lncRNA downstream 138 72595744 ~ 72595981 (+) True G542741
TU614601 lncRNA downstream 767 72596373 ~ 72596662 (+) True G542742
TU614646 lncRNA downstream 3549 72599155 ~ 72599398 (+) True G542781
TU614724 lncRNA downstream 112644 72708250 ~ 72761891 (+) True LOC110526531
TU614735 lncRNA downstream 120696 72716302 ~ 72721047 (+) False G542860
XM_036980902.1 mRNA upstream 230987 72297993 ~ 72339964 (+) False mybpc3
XM_021607563.2 mRNA downstream 18089 72613695 ~ 72631381 (+) False LOC110526524
XM_021607565.2 mRNA downstream 20815 72616421 ~ 72631381 (+) False LOC110526524
XM_021607566.2 mRNA downstream 28572 72624178 ~ 72631381 (+) False LOC110526524
XM_021607567.2 mRNA downstream 32190 72627796 ~ 72631381 (+) True LOC110526524
XM_021607571.2 mRNA downstream 37175 72632781 ~ 72638350 (+) True LOC110526527
TU613870 other upstream 418557 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 468477 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 766489 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1949477 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 69854 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 170075 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 443015 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 777199 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1692172 74287778 ~ 74288138 (+) True G544565

Expression Profile