RNA id: XM_021607567.2


Basic Information

Item Value
RNA id XM_021607567.2
length 2281
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110526524
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72613695 ~ 72631381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAACACTTTATAGGATGATAAAGGATTACCTCTTATGAATAATTATTTTCAAATTACAATATTGAGAAAATGTTGGAACGATTTCCTGCTCATCTATGTTTGCTTGGCTATGTTTTGTCTCCAAGGTTGTCTTGTCGGTAGGAGGAAAGATGTCCCCATCCCCCTGCAAACACGTACAAACCAagccctcctttcctctcctcctccatcccctcccttccctctaacacacactcacactctggAGAAACACGTCACTGAGCTTGGGGACTCAGCGGCTCATTAAGGAGAAGGATGTGATATTCTCAATCGAGACTGTGAGACTCCCAGCACGCCTATTTATAGATGCAATATCTCTATGGCAGTCACCGTAGCGTTGGCTAATCGCAGCCGTGGCCCCAGACGCCAATTAAGAATGAAACAAATGCTTTTTAGGTGGGGTCTGCCCCTCCCTTCTGCTAAGGTCCTTCCGTCCGCCACACTGCCTGGTGGGGGAGCGGATCTGCTTGGAGCGTATTCCTGCATCAGGTCGGGATACAAGGAGGGCGGCATGCAGAGTGCAGTCAAAGCCCTGCCATGGCTATTTTTAAATGCACCCCTCTGGAGAGCAAGAGCTAGGTTTCTTATATTGTGGTTGTTTTCATATGTTTGACTCTGGGTCTGGGATGTCCGTGGATATGTTGAATTGCTGTGACTCATAGGGCATAAAGttccacCAGGTTAGAAGAGTGATGACCATCCTGTTCCTTACTATGGTTATTTCGTACTTCAGTTGCATGAGAGCTGCTCCCATGAGAGACGCCCCAGGTATAAGGGGCCACCGAACGGAAGGCTACTTGGGTGCTGCAGTGACTGCCGGCCAGGGCCACGGGACTCCACAGAGCGGGGGTGGGCCGGGCCAGCATGGGGGACTGCCCTCGCTCACAGACACGTTTGAGCAGGTGATTGAGGAGCTCTTGGAGGTGGAAGGAGAAGCATCTCAGCTGGGGCCTGGAGCTGACAAGGGCCAGGGAGGAGGGGGTCCTTCCTCTGTGGTCACCACGGAGACCAAGGATGTCGACCTGTATGCATCGCGGGTGATGATCAGCAACCAAGTGCCTTTAGAGCCACCGCTGCTTTTTCTCCTGGAGGAATACAAAAACTACCTGGACGCCGCTAACATGTCCATGAGGGTACGGCGGCATTCTGACCCGTCGCGGCGTGGCGAGCTGAGTGTGTGTGATAGTATTAGCCAGTGGGTGACAGCTGTGGACAAAAAGACAGCAATAGACATGTCTGGGCAGACTGTTACCGTCCTGGAAAAGGTCCCTGTCCCCAATGGCCAACTGAAGCAATACTTTTATGAGACCAAATGTAACCCTATGGGGTACACAAAGGAGGGCTGCCGTGGAATAGACAAGAGGCATTATAACTCCCAATGCAGGACAACCCAGTCCTACGTGCGAGCGCTCACCATGGATAGCAAAAAGAAGATTGGCTGGCGGTTTATAAGGATAGACACATCATGTGTATGCACATTGACCATTAAAAGAGGAAGatagtgtatataatgtatagATTTTATTGAGAGTTTAAAAAAGAGAGTAAAGAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGTCAAATGAAAATTTTATGGACTGCATGTAAAAAAAGATGACGTTTATACAGTAAAAGTGATACTACAGTCTATTTATTGAACATATTCATGACCTTGTAAACAATTAAAAAAAGATCTGATCAGTCATTTGCGCCCAGTTTAAATTACTATATCACATTCCTCAAGACATTGTGGTTTGTTTACGTTGCCAAGAATGTGAGAAAGAAGGAAAAGAGCAatgaggatgagggagagggtgaggacgAGTTCCATTAAAAAAAACTTGCATGCTGCTTCAATTGTGAATTGAGAATTTGTCCACCTAAGAAAAAAGGATATGATACCGACCAAAACATTCCGTTTACATACTCAACAGTAAAAGGGTTTTCCTCCTCAGTACTTTATCTGTTTACTGTTCTAAACTTCTCAAGGCGATGTTGGAATTACATACTATGTCAAGGTGCTGTTGTCAAAGCTTtgctgtttatttttttatccccaCCAGAGGACAAAatataagaatatatatatatatatatataaaatttatTCATTGACATATGTTTCTGGATTAATATAATTCATTTTGTATGTTGTGAAGTTGTTTGCAATATTAAATTGAAATATTTAAAGAAATAAAAATGACTATAGGCAACTGAAAAA

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04355 BDNF; brain-derived neurotrophic factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614646 lncRNA upstream 28398 72599155 ~ 72599398 (+) True G542781
TU614601 lncRNA upstream 31134 72596373 ~ 72596662 (+) True G542742
TU614600 lncRNA upstream 31815 72595744 ~ 72595981 (+) True G542741
TU614033 lncRNA upstream 172445 72448348 ~ 72455351 (+) False G542250
TU614724 lncRNA downstream 76869 72708250 ~ 72761891 (+) True LOC110526531
TU614735 lncRNA downstream 84921 72716302 ~ 72721047 (+) False G542860
TU614736 lncRNA downstream 87464 72718845 ~ 72721047 (+) True G542860
TU614767 lncRNA downstream 135530 72766911 ~ 72767323 (+) True G542891
TU614770 lncRNA downstream 147654 72779035 ~ 72780214 (+) True G542894
XM_021607561.2 mRNA upstream 32190 72570817 ~ 72595606 (+) False LOC110526523
XM_021607571.2 mRNA downstream 1400 72632781 ~ 72638350 (+) True LOC110526527
XM_021607572.2 mRNA downstream 10370 72641751 ~ 72643688 (+) True LOC110526528
NM_001160521.1 mRNA downstream 23054 72654435 ~ 72658903 (+) True frih
NM_001124436.1 mRNA downstream 34160 72665541 ~ 72666710 (+) False saa
XM_036980910.1 mRNA downstream 36484 72667865 ~ 72672678 (+) False LOC110518525
TU613870 other upstream 475402 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 525322 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 823334 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 2006322 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 34079 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 134300 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 407240 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 741424 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1656397 74287778 ~ 74288138 (+) True G544565

Expression Profile