RNA id: NM_001124436.1



Basic Information


Item Value
RNA id NM_001124436.1
length 636
RNA type mRNA
GC content 0.46
exon number 4
gene id saa
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72665460 ~ 72666872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAAAACACAAGGGAGTTCAAACTGcctgactgactaactaactaagGAGCTAGAAGTTTGTCGCATCTGCAAGTATGAAGCTGCTTCTAGCTGGACTTGTTCTGACCCTCGTTGTAGGAGCTCAAGCTCAGTGGTACCGCTTCCCTGGTGAAGCTGCTCAAGGTGCTAAAGACATGTGGCGTGCATATGGCGACATGAAGGACGCCAACTGGAAAAACTCAGACAAGTACTTTCACGCTCGGGGCAACTATGATGCTGCCAGGAGAGGACCAGGGGGCAGGTGGGCAGCAACAGTCATCAGtaatgGCCGGGAGATGATTCAGGGTTCCAATGGTCGAGGACACGAGGACTCAGCAGCTGACCAGAAGGCTAACCACTGGGGACGTAATGGAGGGGACCCCAACCGATTCAGACCCCAAGGACTCCCCAAGAACTACTGAACCTACAAAAAGGAGGTTACTAGCCAAACTGAAGGACCAAATTCCAAACAAACATATTGCACTTAATTACTGCTTTTGGTAAAAATGTCATATTCTCAAAAATGATTTCTGCTAATAGACAGGTACATGGTACTGAAACATAGTATACAATGTATTTCAAAAGTGTTGCAAAAATAAAGTGATTACACAACCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU614646 lncRNA upstream 66143 72599155 ~ 72599398 (+) True G542781
TU614601 lncRNA upstream 68879 72596373 ~ 72596662 (+) True G542742
TU614600 lncRNA upstream 69560 72595744 ~ 72595981 (+) True G542741
TU614033 lncRNA upstream 210190 72448348 ~ 72455351 (+) False G542250
TU614724 lncRNA downstream 41540 72708250 ~ 72761891 (+) True LOC110526531
TU614735 lncRNA downstream 49592 72716302 ~ 72721047 (+) False G542860
TU614736 lncRNA downstream 52135 72718845 ~ 72721047 (+) True G542860
TU614767 lncRNA downstream 100201 72766911 ~ 72767323 (+) True G542891
TU614770 lncRNA downstream 112325 72779035 ~ 72780214 (+) True G542894
NM_001160521.1 mRNA upstream 6638 72654435 ~ 72658903 (+) True frih
XM_021607572.2 mRNA upstream 21853 72641751 ~ 72643688 (+) True LOC110526528
XM_021607571.2 mRNA upstream 27191 72632781 ~ 72638350 (+) True LOC110526527
XM_021607565.2 mRNA upstream 34160 72616421 ~ 72631381 (+) False LOC110526524
XM_036980910.1 mRNA downstream 1155 72667865 ~ 72672678 (+) False LOC110518525
XM_036980909.1 mRNA downstream 2277 72668987 ~ 72672678 (+) False LOC110518525
XM_036980908.1 mRNA downstream 2278 72668988 ~ 72672677 (+) False LOC110518525
XM_036980907.1 mRNA downstream 2280 72668990 ~ 72672674 (+) True LOC110518525
XM_036980911.1 mRNA downstream 22633 72689343 ~ 72690657 (+) True LOC118964931
TU613870 other upstream 513147 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 563067 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 861079 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 2044067 70615525 ~ 70621474 (+) False cmc2
TU614766 other downstream 98971 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 371911 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 706095 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1621068 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2571090 75237800 ~ 75238164 (+) True G545485

Expression Profile