RNA id: XM_036980913.1


Basic Information

Item Value
RNA id XM_036980913.1
length 2488
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110526530
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72691788 ~ 72702243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGCTCAGAGGAAGCTGATGTCCCAGGCTGCAGTTAGGGCCCCTGGGGGCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGCTGCTGAGGAGCCAGGGCATTGCAGGGCTCTACAAGGGCCTGGGGGCCACACTCCTGAGGGACGTGCCATTCTCCATAATCTACTTCCCCCTGTTTGCCAATCTGAACAGTCTTGGTGGCCGTGGGGCTGATGGCCCCGCTCCCTTTTATGTGTCCTTTGCATCAGGCTGCATCGCTGGCAGTACAGCTGCTGTGGCAGTTAATCCTGTGGATGTGATTAAGACCAGAATTCAGACCATGACACGGGGAAGTCAGGAGGACACCTACAACGGAGTGACAGAATGCATCAGGAAGATTCTGCGCCAAGAGGGTCCCTCTGCTTTCCTGAAGGGGGCGTACTGCCGTGCTCTGGTCATTGCTCCCCTCTTTGGCATCGCACAGGTGGTCTACTTCCTGGGAGTGGGAGAGTTCCTTCTCAGCTTCCTGCCTCAACAGAACAACTAGTCTtgcactctcacacacagccCACATTGGAGCCAGGTAATCTGTCACTTTCCTTTCAGACACAGCCCACATTAGCCTAAGCCCTAAGGAgttagtcagagagagacagaacggtGTGTGTGTTCTAGACCAAAGTTTGTTCTCTGCACCTGTTGAGGGTGTTCTGATAGGTCATCATTTATTATATCCCCTACCTGAGATTAATTACAGTAAATATTTACATTTAGGTCTGATTTATAACTATATGATAATAATTCAATATCAATTCAAGTGTACTTTTAGTTGTGCTTTATCAAGGTTTAGTAATGGAATTATCTTTATTGTTTTTACTAAGATGATGCAATCATGATATATAAATCTGTCAAACATGACTGTACTGTAATATCTTCTGTCTGTATTGATGCTATTTTCTGTTGTGgttgttttgcacagcttctgtACCTCTTTCCAAATGGTGTTTCCCTCTTCATCCATAAAGAAGCTTTAGAATTGCATTCTTCTTCCAAGAATGCATTGAGTATTTCATCACAGTGATACTAAGATCTGATCTGAGGTGTATTCACTATTCAGGATTAACAAAGATAACATTAGATGTTGGCAGATGTTGGAAACGATGTACTCAAGCTGTGGGCCTTGAAAGAGTCAACATTGCCTGCAGAAAACGTCACTGGTTGGTGACATTGGTGACTACACACCAAACACAATTAGTTCCCCAGCCACCATGTTGGCACCATTTTGTAACTAGATGTCAGTTCAGGGACCTGCCTGAATTTGTCTGATAGAAACTCTCACTTTCGTGGGCAAAATGTTTTCTGTTTGAAGTAAACGGTTTCTGTtagaaaacattttgcaacagacaaaacattttgcaacagaatctgcgtaatgaatacaccccacgGTTCTGAGAGTGGCAATTCACTCACAGCACTCAGCCAGAGTCAAGTCATCAAATCAAAAAGATAAAAACTCACCCTTGACATTTGTGCAAGCCCATCGCCATTATCATTACTGAAAGGTACATTTGTAGACCCTGTATGACCCTGTATTATAGTAACCTAGATTCTATATTGTGCTGGTTCTTCCCTGGACCATTATTCCCTCTTTTCAGGAGGACAAATGCACGTCCAAGCACTTTTATGTCAccacccctcttccctcccctgtAGATATGGTGGGTGTTGGGTTATCAGTTTGGAGTTGTGAATATGGATGTGCACTGAAGGTGTAAAACAGGCTGACAGCTATTGTATTATTCATTTGAGGTAAAATAAGAACAGAAAAAATGTATTCCTCTCGTATATATTGCTGTCTGAAAAAAATGAATGGGATTGTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614646 lncRNA upstream 93524 72599155 ~ 72599398 (+) True G542781
TU614601 lncRNA upstream 96260 72596373 ~ 72596662 (+) True G542742
TU614600 lncRNA upstream 96941 72595744 ~ 72595981 (+) True G542741
TU614033 lncRNA upstream 237571 72448348 ~ 72455351 (+) False G542250
TU614724 lncRNA downstream 6007 72708250 ~ 72761891 (+) True LOC110526531
TU614735 lncRNA downstream 14059 72716302 ~ 72721047 (+) False G542860
TU614736 lncRNA downstream 16602 72718845 ~ 72721047 (+) True G542860
TU614767 lncRNA downstream 64668 72766911 ~ 72767323 (+) True G542891
TU614770 lncRNA downstream 76792 72779035 ~ 72780214 (+) True G542894
XM_036980911.1 mRNA upstream 2265 72689343 ~ 72690657 (+) True LOC118964931
XM_036980910.1 mRNA upstream 20244 72667865 ~ 72672678 (+) False LOC110518525
XM_036980918.1 mRNA downstream 5913 72708156 ~ 72815720 (+) False LOC110526531
XM_036980917.1 mRNA downstream 5914 72708157 ~ 72815720 (+) False LOC110526531
XR_005052235.1 mRNA downstream 5914 72708157 ~ 72815720 (+) False LOC110526531
XR_005052236.1 mRNA downstream 5914 72708157 ~ 72815720 (+) False LOC110526531
XR_005052237.1 mRNA downstream 5914 72708157 ~ 72815720 (+) False LOC110526531
TU614654 other upstream 26050 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 540528 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 590448 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 888460 71800040 ~ 71804462 (+) True G541903
TU611817 other upstream 2071448 70615525 ~ 70621474 (+) False cmc2
TU614766 other downstream 63438 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 336378 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 670562 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1585535 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2535557 75237800 ~ 75238164 (+) True G545485

Expression Profile