RNA id: XM_021607581.2


Basic Information

Item Value
RNA id XM_021607581.2
length 2211
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110526532
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72826597 ~ 72830480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGTTATCAGTTTTTGCATGCAGACTTACATTACAATTATATCACATTTTGAAAGTATAATATTTGTTGACATTTTAATCTGGGTTGGTAATTTCTTTGTTTGCCTTTGGTATTCCGTCCACGCCAGTTTCCCTGCAAGGGGAGGGAATGCTAGCTAGCCATTTAGCGAACGTTCGCTACCTAGCTATTTAGTTCAATATTGCGGTGCTAACTGGGTAACGTTAGCCAGCTGGACTAGCAACATCAATAAAACATAGATGCCCGGAAAGGTGCAAAACATGCACTTTTAGTTATTTCCTTGCCAAGTGTCGATTGCTGAGAGAAAACGTTGCTAACGTAGCCAGAGGCTGCACTGCCAACCCAGGACTCGGGATGGCGGCTAAAGCGGCCGATGGTGGTGGTGCAACTGACCTCATAGACATCTACGACGAGAAGTTCAGTCAAAACAACGGGGAGGAAGGAGATTTTGCAACAACGGCAGAGGCAAGTGATCTTTATGATGACGTGCTCACTGGCTCTGTGAGCCGGGAAAGGAAATTCTCAGAGAACGCTATGCCTCTCAGCAAGGACCAGCCGACGAAAGAGGAGAGCAAACCAGCAATACTGTACACTTACAGTGGAGTGTGGAACAAGAGACTGGCTGTATATGTGGGCAACTTCTCCTGGTGGACCTCCGACAAAGACCTTATTAACGTGGCGCGCACCTTGGGTGTGAAGGACATTGTGGAGATCAAATTTGCTGAGAACAGAGCTAATGGCCAGTCCAGGGGATACGCTGAGGTAGTGGTGGCCACAGAAGAGTCATTGCAGAGGTTGCTGGAGACATTGCCAAATTGTCATGTTAATGGAGAAAAGGTGGACTGCCGCTTTGCCACACGCCAGAATCTTGCCGTGTTTGAAGCCCAGGCTAATAAACGTGTCCCCCAGCGCTCTAACTCAAAGGAGTCGTCAGATACTGGGGATAAAAacacctccatctcccctcctgtGCTCAACCAgaaccactccactgtccctcaCACTATCCACCCCCAACACATTCACAACAAACCTCCCCCTCTGTCAGTCCCATACTTTAGGCTgcctcctcctcttttccctcaTCTTCCCCCAcacatccctcctccccccaTGCCCCACCTTTTCCCTCCACCACCTCTACGTCTCCCCAgccatcctccaccctccctgCATCTCAACCCCGCCTTCTTTCCtccagcacaacatgacaactacagtcaacaacacaacacaccgtACAACCGGCACAGCAGGGACAGTGAAGCGCCCACACCCCAAATGCCAGAGGGAGAGTTTGATGAGCTGATGAACAGAAACAGAGCAATCGCCAGCAGCGCCATCACCAAGGCTGTGTCTGGAGCTACTGCCGGAGACATGCCCCTGGCCATTGAGACGCTTTTGACTGCCATTGCTGTCATCAAGCAGTCAAGAGTGTATGGGGACGAGCGCTGTCGAGCGCTGGTCACCTCTCTGAAAGACTGCCTCTTTTCCATCGAGAGCAAGTCTTACGGCTCCAGGAAAAGACACCGTTCCCGTGACAGAGAACACCGTTCCCGAGATAGAGAGcgggacagggaaagagagcgGGACAGAGGCAGGGAAAGGGAAGAGTCCTACAGCCAGGAATGGGAGGCTGCAGGAATGTCCCGCCGGCACCGAGAACGCTCCCTaagtggggagagagatgggagagaccGGGAGCGTGTTCGGGAACGAGATAGACATAGGGAGCACCGCGAGAGGCACCGCTAGGACATTCTAGGTTGTCTTTGTCACTGTCAGGCTGAGTAGGAGGGGAGGCAGGACTTTATTTCTGCACCAAGCTGCTTAAAAGTCTGGGTTAATGGATGAACTGATGGTGAGACAAAATGAATGtccatagcccccccccccccaaacctacTGCCCCCATCTCCACGTTTCCCTGGTATTCAGCAGCCACCAAGCATTTTACCTTCTAATCTTGGCCATCACCAACCCCCTCTTTCACAGTGATACTGTCTTTGTAATTTTATTTTTGATTATGAATTGACCGTTTCAGGGTTGTGGCTACAACTTGTTTGACACACCTGCATGCACAAAGCAGAAGTACATGTTTTTTATATGTTGAACTGTGTAGTGCTTTTTTTTTCCCTCTTCCCCCTTATTTTGTATCAAATTTGAACTGATTAAAAAAGGCTGTTAAAAT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614714 lncRNA upstream 212 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 5673 72819924 ~ 72820971 (+) True G542905
TU614781 lncRNA upstream 21040 72805403 ~ 72805604 (+) True G542902
TU614780 lncRNA upstream 22459 72803808 ~ 72804185 (+) True G542901
TU614776 lncRNA upstream 32948 72793218 ~ 72793696 (+) True G542898
TU614785 lncRNA downstream 2024 72832504 ~ 72832731 (+) True G542906
TU614795 lncRNA downstream 21168 72851648 ~ 72852100 (+) True G542916
TU614876 lncRNA downstream 156776 72987256 ~ 72987462 (+) True G542994
TU614891 lncRNA downstream 197720 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 201047 73031527 ~ 73031864 (+) True G543012
XM_036980917.1 mRNA upstream 10924 72708157 ~ 72815720 (+) False LOC110526531
XM_036980920.1 mRNA downstream 1504 72831984 ~ 72884038 (+) False LOC110526536
XM_021607583.2 mRNA downstream 9105 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 9106 72839586 ~ 72884038 (+) False LOC110526536
XM_021607585.2 mRNA downstream 9108 72839588 ~ 72884038 (+) False LOC110526536
XM_021607586.2 mRNA downstream 9123 72839603 ~ 72877957 (+) True LOC110526536
TU614766 other upstream 59793 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 159772 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 674250 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 724170 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1022182 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 208141 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 542325 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1457298 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2407320 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2591381 75421861 ~ 75422752 (+) True G545601

Expression Profile