RNA id: XM_021607585.2


Basic Information

Item Value
RNA id XM_021607585.2
length 6531
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110526536
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72831984 ~ 72884038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGGAGATTCCTCGATATTCACAAACCACCAGTCGTGCATTTCACAGTATGCCAGCGGTTTATACAGTGCATACAATCGCCGAATCCTGCGTGAACGACGCAAATCCAACTGGCTCTATTGTAGGGCGATGGATGACGTAAAGTTCCTACGTAAATGACGCAGTGGTGATTCGGTGTTTGATCCGCAGCTGCGGAATAGGGAATGGGAATAGAAACGACGTATCTTTTCAGGGGTAAAAAATTGGTCTGTCGGCTGGTATTACAACAACCAATTTCTTGGGACCAGCTACTTGAAGTAGTTTGATTGGGTTCGGGAGTTGTCCGGTTGGTTGTCACATGATACAATATAAAAAGATTGTGTAGCGATTTATTTGTTAAACTTCACTCTCTGTCAGTGAGAAACATTGTATGGATGAACCTCCCGGCTCTCCTACATGGCGTGAAGAAACATCGGTCAGCAGATATCCTACATATCGACGACGTGTTGCAATTTATCGATGAATTAAGACCTTGAATTCCAAGGCAGAGTAAATGGAGCGCGTGTCTGCACGGTTTGACTGTAGGTTAGGGTATGATCCAGCTGCGACCCTTATCTGATTGCCTGGCCCGGATTCCAGTGGAACCTGTCACTTGAAGTACCGTGGTTAGATTCATAGGGAGGTACGTGTGTGTTCTGCCAGCCACGGTTCAGCGCAATATTGTCGCTGCTGAGTTTTACAGGGTTTATCCCCGGCAGAGCACTGGTCCAGGTCCGCGTGGAGGTGAGCTCGAGGTGGACAGGCGTAGGATGGGAGAACGAACAGAACCGATGCAGTGGGTCTTGGCAAGGCATCGTCACAATACAGgGCAGTGATGCCTGGTATGGTGATGTTTCGGCGGCGCTGGTCAGTTGGCAGTGATGACCTAGTGCTGCCCgccctcttcctctttctactGCACTGCATCTGgcTGGTGgttctgtctgtggttctgttcgGCCTGCCCTATGGCTCGGACCAGTCCTGCTCGGTCACCCTGGTGGACCATGGCTGGGGGTACCTGGGCATCTTGGTCAGCTGCCTGATCTGTGAGAGCGCCATCATATGGCTGAGTATGAGAGGCAGCATCCTCTACACACAACCCAGAGAAGCTGTGCAATATGTCATCTACATACGACTAGCCATCTTGTTGGTGGAGTTGGTATATGCAGTGGTGGGGATCGCCTGGCTTTTCCAATACTACCAACCGTGCTCTGATGtcactgccaagaaccttgctttGGGGATTGTGGTGTGCAATTGGCTGGTGATCTTCAGCGTGTGCTTCACCCTCATGTGTACCTTTGACCCCACGGGACGCACATTTGTCAAACTGAAAGCCACCCGGCGACGCCAACGCAACCTCACCACCTACACCCTCAGACACCGGCTAGAGGAGGGCCAAGCCAGCAGCTGGAGCAGGAGACTGAAGTTCTTCATGTGCTGCACCCGAGCCCAGGACACACAGTCTGATGCGTATTCCGAGGTGGCCAGCCTGTTTGCAGAGTTCTTCAGAGATCTGGACATTGTGCCTAGCGACATCATAGCTGGCCTGGTGCTGCTTCGCCAGAGACAGAGGTCTAACAGAGGTGCCATCCTGGACCAGGCCAACAATGACATTTTAGCCTTCTTATCTGGAATGCCTGTAACTCGCAACACCAAATACCTGGACCTTAAGAACtcgACGGAGATGGGCATGTACAAGGAGGTGTGTTACTACATGCTGTTTGCCCTGGCAGCGTATGGCTGGCCCATGTACCTGATGAGGAAGCCTGCGTGTGGGCTGTGCCGCCTGGCCAGCTCCTGCCActGTACATCAGGGTCTGGCTCTAGGCTGTCCCAGACAgtgacagtggaggaggataacTGTTGTGGCTGTAACGTCCTGGCTATCCGCCGCCACTTCCTGGACAGAGAGCTGAAGCAGGTCCACGTTGTCTACACATCCTGGCACGACGCGGTTTACGAGACACCTTTCTTTGTGGCTGTGGATCATGGGAAAAAGAAAGTTGTCATCAGCATTCGAGGAACCCTGTCCCCCAAAgatgcCCTGACGGATCTCACAGGGGACTCTGAGCGTCTGCCAGTGGAGGAGCAGCATGGAAACTGGCTGGGCCACAAGggGATGGTTTACTCAGCAGAGTACATTAAGAAGAAACTGGAGCAGGAAATGATCTTGTCACAAGCCTTTGGAAGAGATTTGGGTAAGGGAACCATGCACTACGGGCTGGTGATAGTGGGACACTCCCTTGGTGCTGGTACTGCAGCCATCCTGTCATTCCTGCTCCGTCCCCAGTACCCCACACTGCAGTGCTACTCCTACTCTCCACCAGGTGGCCTTCTGAGTGAGGATGCCATGGAGTACTCCAAAGAGTTTGTCACTTCTGTCGTTTTGGGAAAGGACCTTGTCCCAAGGATTGGTCTCTCTCAGTTGGAGGGGTTTCGGCGCCACCTGCTGGAAGTCTTACAGAAGAGCGACAAGCCAAAGTGGAGGATCATTGCAGGGGGAACTAAGTGCATTCCTAAGTCCGAGCTGCCTGTGGACGATGGCCCCCAGCCCCAGACAGCCCCCGTGCCCCCCAGCACCCGTCTCTGGCTGCATCCCAGTGATCTCAGCATCGCCCTGTCAgcctccacccctctctaccccccggGCAAGGTCATCCACGTGGTCCACAACCACCCCTCAGAGACATGctgTGGACAGGAGGAGCCCACCTACTCAGCTCTCTGGGGGGATAACAAGTCTTTCAACGAGGTCATCATCTCCCCTGCCATGCTAAACGAGCACATGCCTCACATGGTGATGGAGGGACTCAACAAGGTGCTGGAGAACTATAATAAAGGGAAGACAGCCCTGCTGTCGGCTGCTAAGGTAATGGTGAGCCCAACCGAGGTGGACCTGAACCCAGAGACCATCTTCATGGAAGCCGCCCTGCCTCCTGCCACCCAACAACCCACCCCAACCACCCAACACCGCAGGAACAGCAGCGTTCGtTCCTGTGCTCGCTCTGAGATATCACTGGATGGCTTTGCGGAGTGCCCCCCTCCCCAAGTGTCAGTGGTTCTGCAGGGGGCCAGGGAGCGCCTTACTGTGGAGCTGAGGGACCGCCACGCCCCCTTGGCTGTGATGGAGAGCCTGTCAGATGCAGAGTCCCTCTACAGCCTGGACTCCCGACGCTCCTCAGCTGCACTCAGGGGCTCGCCCATGCTGGGGTGCCTTCCCTTCCAACTGAATGCACCTATCCCTGAGGAGAACCCCTCTCTCAGCTCCCGCACTGAGCTGCTGGCTGCCGACTGCCTCTACCAGGCCACCCCAGAGCACGAGCTGGGAGAGGCAGGACCTTACTTCACTCCTCTGGGATCCGGCTCCACCCCAGACTACCCCATGCGCCTTTCCCCTTCCACCCCGCGCTATAGTGGCCACCACTCCCCAACACCACTGGCCCAGAGTGTCATAGGTCAGCCTTTCACACAAAAAGAGCCTTGTGCCGCCCCTTGCCATCAAATGCCTGGCATTTACAGCCCAGGCAGCACCCCTAACGCTCCCCACAACCCACGGATCAgccatggggaggaggagggagtagaggcaGAAGGGTGggaaacagagacaggagagtCACAGCCGccctccagtcctccagcccagCTGTCCAACGGCAACCCTAGCCAGGCAGTGCTGGAGTTTGCACAGTACCTGGACTCTCTCTTCAGGCTGGATGGCAGTGGCTCACCGCCTCTGGAGTTGTCAGACGGGGAGTCTGAGTCCGGTCGGGGGTCAtatggtcagggagaggggccaggggaaggacagaggggggacGATACACAGCTTCTGGCTCGGGCCACAATGGAGCCTAACCTGGTCCCCAAGCCCCCGCGTACCTTTGCTGGATCTGCTGACCCTTCCTCTGgcatctccctctcaccctcattccccctctcttcctctggtgAGCTCAATGACCTCTCTCCCGCTGACGGAGCACCTCCTCCCACTCACTCACTACGAACCTCCACTCCCTGTCCCTACCCTGAGGAAAACACACTGGCGTCTATGGTATAGTGGCCCACTCAGTCCCTCcatgactctttctctctcctctttccttatTCCGTTGCTGCATCTATCTGATAAAGTATCACTGAACATGCATGCGATGGAATGCAATCTGCTATGCTGTTACAGTACCTTACAAAGACATGACATGGCAGACCATAATGAATAAGACTGAGATGAAAAACTCTTGTTCCATTTTCAGGTGTCAAAAGCTGTGTAAAGCATTTTCACTACTAttgtaataatacattttaatctCTGTCTGCATGCCAGGGGCCTGTTCTGCTTTGGGGTGAATAGCCTCACCACTGACTCATTCCAACACACACTATCTCACATCAACACATGGTAGCATACAGCCCTGCAGTGACGTGACTTTATCAAATGGGAGACAACTGAACAGGGATAGGGAGGAGTTAGACACTAGGTGGGGTTTTCATTGGCACATAACTCACCTTCCTCCCTCATCAGTGCCTAAAGCTTATTCATCTTTAATATCAGGAAAGTAAAAAAACGGAGACAGATGCTGaacaatagagaggagagagagagaagacgttATGGTTTGGTTTCTCAGGTCTATCAGGAAATTACAGTGTGGAAGAGAAGGAGTGTAGATCATAGAGAATTGATGCGTCTTAAAACAGTGATTGTGACATGTTAAGAATGTGGTTTTTAGTCTTTGGTTGTCTTTTATAGCATGAGGAATGTagtattcatttatttttttaaacagaactCACTTGTCAGTCAGTAACTCTTACTAACATACAGACCATCTCACACACATCAAAATGCACAATTTGCCCCCTTTTTGCCCAAAAATGTATtgccaaatgtatttataaagtgtGATATTGTTTGTTTGTGAAATACTGCAAAATGTACACTTTCACAAAACAAAGATACAGGTTTCAAGTTTAACTCTGAGAGGGAGAAGATACATTTTGGTATCGCTCCCTTTTAATAGCCAATCAGTCTATTCCCGTTCAAACGGTGTTAATACACCCTGGAGAGGATGAGGAAGCTATCCCTACAACACTGCCATGGCACATATCTCCCAAAACATGTCTCTCTCCAAGTGTTTGTACCAAGCCAATTATGCTAAAAAAAACATGAGATGCACTGTAGGAGATTGTTCCTCTTAAAGGGGTCTTGCTGAGGTACACAATTATGTCAATGACTTCTATGTCTTTGGTTCCCTTTAAACTGGTTAATCTCAAGCATATTGAGGTTGAACTGTACGGGTTGTAGTGGCCACTTTCACTACATTTTACAAACATATTTCATATCAGTTGTATTTGTTGGATCAGACATACTACATTATTTATTACTGTTTCTTACTATTATTGATGTTATTATTATCCTTATTATTACTCTTGTAACAGTTTGGTTTGCGTTCTATGAGTTCGGCTTTCAGTTGCTGGGAAAGGCTGGTGCATTTCAGCCGACTCTCAAAATAAGGGTATATCTCTGTGGGAAAATAACTCTATCCAAGTGAAAAAGTACTGGGTGTGAACATCACAGGAGATTGGTGCCACCTTAATTGAGGTAATAGCTCGTGGTAATAGCTGGAGCGGAATTCGTGGaaaggtatcaaacacatggtttctatatgtttgattccattcgctctgttccagccattattatgagccattctcccctcagcagcctccactagcTGCCATGGTAatggcagagagacagactctGTAATAGGAAGTGGGGTCATTACAGTGACCTCTGATACAATACAGCCATTCTGAAGGGGTTAATGTGGCGACCTATAGAAGCTGTACTCTTAGAAATGGCTTTGCTGTGGTATCACTCAACAGGCCTCTCTGTGACCAGATTACAGTTTGACACCACACAAATCCATGCTCTCACAGTAGTCTCTACTTTGCCAGCACAGTGTTGAACAACCAGTGTGAAATAGCTTTGCTGCAGTGGGTCACGGCCCAGTGTAGGTGTTATCAGCACCACGATAGAAAGATGCCACATTCCCTTTTCACCATAACATGTACAGCAGTGTCTTATTTGTCATTATTTAAATGCAGATGTCTTGTTTCCTgtctttttttaaaaattattattataaaaaaaatattaaatgaaAATAGAATAACATAGAAAATGGCTATGATAACAGGTATATTACAAATCTATATCAATATTGACATGTATAGAAAAAGTACAAATGTATGCAGGGAAAAAGGAATCTATTTAGTGAGAAAGATCTATATGACTGATTATTGGCAGAATTGAACATAATTGATTACTCATTTTTCTGTGTTGACAGATAAAACAAATCAATGATGTCTTGACCATGTTTACCTGGTTTGCTACTCTTCTCTTCCTGTCCCAGATTGAGAATGTATTTAACCCCCGCCACCTCTCACTGCCCTGCCTGTAATGGAATAAAGCAAAACCAATTTAAGGAAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614785 lncRNA upstream 6857 72832504 ~ 72832731 (+) True G542906
TU614714 lncRNA upstream 13156 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 18617 72819924 ~ 72820971 (+) True G542905
TU614781 lncRNA upstream 33984 72805403 ~ 72805604 (+) True G542902
TU614780 lncRNA upstream 35403 72803808 ~ 72804185 (+) True G542901
TU614876 lncRNA downstream 103218 72987256 ~ 72987462 (+) True G542994
TU614891 lncRNA downstream 144162 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 147489 73031527 ~ 73031864 (+) True G543012
TU614895 lncRNA downstream 148078 73032116 ~ 73032334 (+) True G543013
TU614896 lncRNA downstream 148473 73032511 ~ 73032760 (+) True G543014
XM_021607580.2 mRNA upstream 9108 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA upstream 9108 72826644 ~ 72830480 (+) True LOC110526532
XR_005052236.1 mRNA upstream 23868 72708157 ~ 72815720 (+) False LOC110526531
XM_036980921.1 mRNA downstream 439 72884477 ~ 72907006 (+) True LOC110526537
XM_021607590.2 mRNA downstream 105968 72990006 ~ 73001543 (+) False LOC110526539
XM_021607589.2 mRNA downstream 105969 72990007 ~ 73001543 (+) False LOC110526539
XM_021607591.2 mRNA downstream 106141 72990179 ~ 73001543 (+) True LOC110526539
XM_021604998.2 mRNA downstream 127679 73011717 ~ 73013424 (+) True LOC110525049
TU614766 other upstream 72737 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 172716 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 687194 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 737114 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1035126 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 154583 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 488767 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1403740 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2353762 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2537823 75421861 ~ 75422752 (+) True G545601

Expression Profile