RNA id: XM_021607591.2


Basic Information

Item Value
RNA id XM_021607591.2
length 3834
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110526539
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72990006 ~ 73001543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAACTAAGGAATATTTTTTCACTTCTCAAATCCTGGCCTGGTCTGTTTGGCAACTGTTCCCGGGAGTCTCGCGGTTTTGCGCCTTTGGGTTTAGAAACTGTGATATTATTTAGACGTAATCATTCGATAGATCTGCAAAAGATAATCTATTGTCCTTTTCAAAGCAGAGAAGAATGGCTTAAATAAATTTGGGATTCAGTAAATGGCTTGCAATACATTTGGGATTCAATACAAATTGACTTGCATAAAAATGCTTACCTAAATCTGTCATACAGCTTCCATAATAATTAGTCTGCAATTAAATAGGCAATGTTGTTGAGGACTGATTCTAGTTAAATCTGTCAATCTACCAAGATGAACTCAGGCAATTCTAGGACTACCAACGGGGCCTTGAAGCCACCCGACCCTGTTCTCGTGTCTCGTTAGCATCTGTAGCCTGCCAGCAGTATAGTGTATAGTTCTCGGTGAGGCCGTGGAGGCAGAACACCATTGTCGATACAAAATAACATACAAGTTACACGAAATATATAGAGCTAAAACTACAACGTCAGACGACGAACAAAGACAGATAGCCTTAAGATGCCTTCAGCAACAGTTGGCCACAATGCTGTTCAGTCCTCCAGCCCAGAGTTGGGTTCTGGGACCCAGTCTGAGGCCATGAAGCAGGTCCTGCAGGTGATAGACAAGAAAGTCCGCAACATGGAAAAGAAAAAGGGCAAGCTGGATGACTACCAGGCCAAGAAAAATAAAGGAGAACGGTTGAACCAGGATCAGCTGGATGCCTTAACTAAGTTCCAGGAAGTGACCAACAACTTGGATTTTGCAAGGGAGTTGCAGAAGAGCTTCCTGTCTTTGGGGCAGGAGATTCAGAAAGCAGTGAAGAAGTCTGCCCGGAGGGAGCAGCTGCAGCGGGAGGAGACGGAGCAGAGGCGGCTGAAGGCTGTGCTGGAGCTGCAGTTCCTGCTTGACCGACTGGGGGATGAGCAGACGAGGCAGGACCTGAAACAGCTCGCTGCAGGTTCCCCCCTGCTCACTGACTCTAACCTCACCGCACTGGACAGTTTCTACAAGCTCGTGGGCCCGGAACGGGACCATGACGTCAGGTTGACTGACCAGTATGAGGAGGCCTCCCTACACCTATGGGAACTGCTAGAGGGCAGAGACCAGGCTGTGGCAGGAACCACATACAAGGCACTGAAGGAGACCCTGGACAAGGTGCTGCTGAGTGGCTATTTTGATAGCGCACAAACGCATCAGAACGGAGTGTGtgaaaaagaggaggaggaggaggaggaagaggaggaggaggagcagcagcaggagcagtcTGTGGCGCATGAGTTGTCTGGGGGCGGGGAGCAGCCTGCAGCACCAGAGGGAACAGTTACTGAAGAATACACAGAGGCCATTGAAGTAGAAGCCACAGAGTTTGTAAACAGACAGTTCATTCCAGAAACCACATACAGCAGCACTGGCAACGACCAAGTAGAGGAGTGGACAGCAGAGGTCCAGGTGGTCAACGTCCTCCAGCACCAGCCTCCTCCCCAGATGACCCCTGAGCCCCACACTGTGAACCCAGTCTCCCACACGCCTGACCCCGTGGTCCGGAAGCAGGTCGTACAGGACCTCATGGCCCAGATGCAGGGGACCTATAACTTCATGCAGGACTCCATGTTGGAGTTTGATGGCCATGCCCTGGACCCAGCCATCGTGTTGGCCCAGCCCATGAAGCCTGCACAGAGCGTGGACCTGCAGCAGATGGTTCATTCAGAATCCAGACTTGCTCAACCAAGCTCAGTTCCTGAATCTACACAAGTCCTCATGGTCTCCCCTACACCGGATGCCTACTCCTCCACAGCGCCTCTCTACCAGCCCTCCCACACAGCAGAGCCCCGGCCACAGACAGACGGCATCGACCACATCCAGGCCTCGATGTCCCTGTCGTCTGAGCAGTCCCCCGCCCTGTCCTCCTTGCCCTCTGCCTTCCCGCCCGTCTCCACCCCCCACAGCGGCGGCATCAATGTCAACGCAGCACCATTCCAGTCCATGCAAGCGGTGTTCAACCTGAATGCCCCCGTGCCCCCCACTAACGAAGCAGACGGTCTGAAGCAGTTCCCCAGTGGCTACGGCCAGGGCTTCAGTAGCCAGGCGGAGCACTCCGTGGAGGAGCCTGACATCCAGCAGGACACTCTACAGTCCgCTGTAGGAGGCTTCCACACCCAAGACCAAGTGATGTCGTCGGCAGCGGGCCACCAGGTGCAGGGGCCAGGCTTTGGGCGGCAAGGCCAGTCCTTCTATAACAGCAGGGGGGCCGTGTCTCGCGGAGGCCCCAGGAACCCACGGGGCATGATCAATGGATACCGAGGATCCTCTAACGGTTTCAGAGGAGGATATGATGGCTATCGCCCTCCCTTCTCGAACGCTCCAAACAATGGTTATGGGCAACAGGCCCAGTTCAGCACTGCACCCCGGGACTACTCCAACAGCACCTACCAACGGGAGGGATATCAACCAGGCTACAAGCGGGGAGCAGCCCAGGGACCTCGGGGTTGCTCTCGAGGCCGGGGGGGACTGTTCAAGCCCAGCCGAGGGATGGTGACCCAACTGTCTGGACATCAAGCCAATTAGTCTTGGATACCAACAACTCTTCCACATCACCTCTACCCTCCTGGACCATCCTTCCCCTGATCTGACTGTTCCTCTCCATATGAAGCCTGGGTCTGAAGCCATACATACCACCCGTAGCTCTGTCAGATCTTTAGCTTTCTCACAATCATGCTATTGCATAGCCTTAAACTGATCAAGCTGGAACATGTGTGCCTTTGCTGTTGGACTGTTTATTTGGGTATTTGCTTGATAGGCAATCATTTACAAAACTGTCTGGGGCTAGAGACAGGCTTTGGAAGCATGACACAAAAGACCAAACAATATTGACTGCAGTCATACCATGCAAGGACATTGTCTCAATGTGAAGATTGTTTATACTGTACATTGTATTGCTATGGCATGTTGGGGAGTAAAGTCAGTACAAATGGTGTGTAGTCTAAGCAGGTTATAGGTCTGACTGATTTACCCAAAATGAAGATTTCCTGTGTGTACATTTTGCTCTGGCCAGATGGTAGCTGTTATGTTCTGTAAATTTGCATTTGTCACTTCATATCGGCTCTGTCCAAAAACATACTTTGGAACTGATGTCTACACTGTAGGTCTGTAGAATGTAAGGATTCTGTCAGTTTGACTCTGAGTCTTGAATTCTAGCTGTAAAGAATATCACTTTACAGATGTTTTCCTGTGCAATTGGTCATCTGAAAATTAAACTAATCTTTTATACAGAGATAAATTAGGCACACCTCTATGGTGCAAGATAAAAGACCATTTGCCCTAGCCAGCAGAATTTGGTGAAAGTAAAACAAAAAGGCCAATTAAAAGAGACTCTGGGGGTGATGTGCTGAGTACAAAAGGTAGACATTGCCTGGTAACGGGCTGTTCAGTATCAATACATGTACTGGCCTTGGCCAAGACACACTTGCAGGTCATTAGGAACAGTAGGCTCACTCaaacacaaatgtgaaaacaAGACGTGGTTACCTATAATCTCTACAGAAATAACCAGATCATCAACTGACTCTTGCATTTGCACATCAATAAGGTAATCCAAAAGGGCTGGCTATAGTATAAGTACCACAAAATAAGACTGCAATGCACTCAGGTTTCCCATGACTAGTGCCCATAATAGCCAACATTAGCATACATTGCTGTTATCAGACTTGAGAATATGAAGTAATACACAGTAATGAACCCATACAAAAAATAAAGTAtatttatattcta

Function

GO: NA

KEGG:

id description
K18743 CAPRIN1, GPIAP1; caprin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614876 lncRNA upstream 2717 72987256 ~ 72987462 (+) True G542994
TU614795 lncRNA upstream 138079 72851648 ~ 72852100 (+) True G542916
TU614785 lncRNA upstream 157448 72832504 ~ 72832731 (+) True G542906
TU614714 lncRNA upstream 163747 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 169208 72819924 ~ 72820971 (+) True G542905
TU614891 lncRNA downstream 26657 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 29984 73031527 ~ 73031864 (+) True G543012
TU614895 lncRNA downstream 30573 73032116 ~ 73032334 (+) True G543013
TU614896 lncRNA downstream 30968 73032511 ~ 73032760 (+) True G543014
TU614901 lncRNA downstream 33571 73035114 ~ 73035455 (+) True G543016
XM_036980921.1 mRNA upstream 83173 72884477 ~ 72907006 (+) True LOC110526537
XM_021607583.2 mRNA upstream 106141 72839585 ~ 72884038 (+) False LOC110526536
XM_021604998.2 mRNA downstream 10174 73011717 ~ 73013424 (+) True LOC110525049
XM_021607593.2 mRNA downstream 14670 73016213 ~ 73020001 (+) True LOC110526541
XR_005052444.1 mRNA downstream 15865 73017408 ~ 73017539 (+) True LOC118965112
LOC118965096 mRNA downstream 17512 73019055 ~ 73019257 (+) True LOC118965096
XR_005052450.1 mRNA downstream 18029 73019572 ~ 73019700 (+) True LOC118965119
TU614766 other upstream 223328 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 323307 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 837785 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 887705 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1185717 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 37078 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 371262 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1286235 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2236257 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2420318 75421861 ~ 75422752 (+) True G545601

Expression Profile